Dear All,
A simple issue of precedence. In the recon-all pipeline, wm edits take
precedence to pial edits.
If there are both wm and pial defects, should one apply edits sequentially,
say on brainmask.mgz (first wm edits, rerun recon-all say recon-all
-autorecon2 -wm, then do pial edits, rerun recon-all say recon-all
-autorecon2 -pial) or to some extent pial edits influence the final surface
generation in conjunction to wm edits (understood that the latter may
influence more the final form than the former -pial- edits), in that case
one may do both edits, then run -autorecon2 -wm only.
Please advise,
Octavian