Freesurfer July 2022

freesurfer@nmr.mgh.harvard.edu

90 participants
122 discussions

Segmentation Mistakes
by Wang, Yu 10 Jul '22

10 Jul '22

External Email - Use Caution Hello FreeSurfer Developers, I used the recon-all -s c1NT816 -i smwrc1NT816_screen_mpr.nii -no-ants-n4 -all command, and the script of recon-all did not shows any errors. But the segmentation of this shows very strange and the screenshot of FREEVIEW was attached in https://secure-web.cisco.com/1DiZCsT29ph0nxelagWzgxiK83DeI03n5r7jqcEK7snAAy… I have search for this mistake online, and I only find a similar one (https://secure-web.cisco.com/17rnPwV1D9noAjOEul8R2iNskGBej5a9MhpLH-Wq1n1UTw…) but it do not show the method about what would cause this problems and how to solve it. 1. FreeSurfer version: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b 2. Platform: ubantu 20.04.4 3. uname -a: Linux sulu 5.4.0-113-lowlatency #127-Ubuntu SMP PREEMPT Wed May 18 15:12:18 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux 4. recon-all.log: see attached I will be appreciated if you can give me a hand with these problems. And looking forward to your reply. Thanks in advance, Yu

2 1

Command Not Found
by Rachel Wagner 10 Jul '22

10 Jul '22

External Email - Use Caution Hello, Thank you for your help! I am trying to register my spm image and am getting the following error: developer@developer-VirtualBox:~$ kregister2 --s home --mov updated.mgz --regheader --reg register.dat --surf orig kregister2: command not found Is my path not set correctly? Thanks again, Rachel Wagner

3 4

Convert coordinates from FreeSurfer space to Native space
by Yi-Yu Chou 10 Jul '22

10 Jul '22

External Email - Use Caution Dear FreeSurfer experts: I wonder if there is a command to convert coordinates from FreeSurfer space to the native space. Thanks in advance ! Yiyu

4 3

(no subject)
by Alex Zhang 10 Jul '22

10 Jul '22

External Email - Use Caution Hi, The FreeSurfer VM image needs a pass code to unarchive. Would you please send me the pass code? Alex

1 0

help!, I need the pass code to open the FS_7_2_0_Ubuntu_18_04_06.ova.7z
by WenJing 08 Jul '22

08 Jul '22

External Email - Use Caution Hello FreeSurfer Developers, I downloaded Vbox from the official website and installed it on my Windows system, and then downloaded the FS_7_2_0_Ubuntu_18_04_06.ova.7z, but I need the password to successfully open the compressed package, as following picture shows, so I sent this email to ask for the password, hoping to get a reply, very grateful!

1 0

please, I need the pass code to open the FS_7_2_0_Ubuntu_18_04_06.ova.7z
by WenJing 08 Jul '22

08 Jul '22

1 0

Pass code for expanding Ubuntu Virtual Image
by Boscutti, Andrea 08 Jul '22

08 Jul '22

External Email - Use Caution Hi, As instructed by the Freesurfer web page on Virtual Machine setup, I am reaching out to you for requesting the pass code for expanding the archived Ubuntu Virtual Image. Thanks in advance, Andrea Boscutti (postdoctoral fellow UTH Houston)

1 0

Cortical Projection
by Rachel Wagner 08 Jul '22

08 Jul '22

External Email - Use Caution Hello all, I am currently working on displaying my SPM overlay on a 3D brain volume, using bbregister, and am getting this: https://secure-web.cisco.com/1V05qEsg4uCsadH5DrWJGv9HH1_bizH0ESv2KX7f4dPKwa… I am hoping to smooth out the surface so it is more continuous and change the coloring of the brain. Are there options to do so? Thank you very much in advance!

1 0

I need to a pass code
by Jiu Chen 08 Jul '22

08 Jul '22

External Email - Use Caution Dear freesurfer, I need to a pass code to expand the archive: FS_7_2_0_Ubuntu_18_04_06.ova.7z Thank you. If you have any questions, please don't hesitate to contact me. Best! Yours, Jiu Chen, PhD Associate professor NBH and NDU E-mail: ericcst(a)aliyun.com/ chenjiu1223(a)njmu.edu.cn Tel: 86-025-8229-6623

2 3

Pass code to unzip file
by Ariel Miquelini 07 Jul '22

07 Jul '22

External Email - Use Caution Dear freesurfer team, I wrote you this email in order to ask if you could send me the pass code to unzip the file FS_7_2_0_Ubuntu_18_04_06.ova.7z Thanks. Ariel Miquelini.

1 0

← Newer
1
...
7
8
9
10
11
12
13
Older →

2026

2025

2024

2023

2022

2021

2020

2019

2018

2017

2016

2015

2014

2013

2012

2011

2010

2009

2008

2007

2006

2005

2004

Freesurfer July 2022