Freesurfer July 2022

freesurfer@nmr.mgh.harvard.edu

90 participants
122 discussions

Fwd: Passcode for the VM
by MANUEL RUOCCO 05 Jul '22

05 Jul '22

External Email - Use Caution Hello, I would like to ask for the passcode for the VM file containing FS_7_2_0_ubuntu_18_04_06.ova.7z. Thank you for your assistance.

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Postdoc Position in Cognitive Neuroscience at Tulane University
by Ben Deen 05 Jul '22

05 Jul '22

External Email - Use Caution The Social Memory Lab, directed by Dr. Ben Deen, is seeking a Postdoctoral Fellow. The lab studies social perception, cognition, and memory, with the goal of characterizing the cognitive and neural basis or our ability to understand other people. We use behavioral and neuroimaging (fMRI) methods in humans, with a focus on precision imaging of functional organization in individual brains. Specific research projects within that scope are flexible and dependent on the interests of the candidate. Fellows will have the opportunity to conceive of and design research studies, lead and participate in data collection and analysis, mentor graduate and undergraduate lab members, write fellowship and grant proposals, and present their results at scientific conferences. *REQUIRED EDUCATION AND EXPERIENCE:* 1. PhD in psychology, neuroscience, or a related field *REQUIRED KNOWLEDGE, SKILLS, ABILITIES/COMPETENCIES* 1. Ability to communicate effectively with lab members, university staff, and volunteers 2. Experience with behavioral and/or neuroimaging research with human participants 3. Proficiency coding in Matlab, Python, or R *PREFERRED QUALIFICATIONS:* 1. Experience with fMRI data collection and analysis 2. Strong publication record in psychology and/or neuroscience Interested candidates may apply online at http://secure-web.cisco.com/1MoQV-Z4F4SEZC3oVL8Qnleak3C0d8YKf-cog-cSxWXfCBn… or email bdeen(a)tulane.edu with any questions about the position.

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Research Technician Position in Cognitive Neuroscience at Tulane University
by Ben Deen 05 Jul '22

05 Jul '22

External Email - Use Caution The Social Memory Lab, directed by Dr. Ben Deen, is seeking a Laboratory Research Technician who will contribute to multiple aspects of research projects studying social perception, cognition, and memory, using behavioral and neuroimaging (fMRI) methods. The Laboratory Research Technician will work as part of a team comprised of postdoctoral fellows, graduate students, and undergraduate research assistants, and will coordinate day-to-day operations of the lab. Major responsibilities include participant recruitment, collection of behavioral and fMRI data, data analysis using Matlab or Python, and administrative duties. Other tasks will be commensurate with the experience and interests of the technician. The position requires excellent communication and organizational skills, a high degree of independence, and an interest in cognitive neuroscience. *REQUIRED EDUCATION AND EXPERIENCE:* 1. Bachelor’s degree in psychology, neuroscience, computer science, or a related field 2. Previous experience working in a research lab *REQUIRED KNOWLEDGE, SKILLS, ABILITIES/COMPETENCIES* 1. Ability to communicate effectively with lab members, university staff, and volunteers 2. Ability to perform daily tasks in a highly organized fashion, with attention to detail 3. Strong time management skills and ability to effectively manage multiple assignments 4. Willingness to work flexible hours, including evenings and weekends as needed 5. Desire to acquire new skills and competencies in a dynamic research atmosphere 6. Proficiency in computer skills, including Microsoft Office applications *PREFERRED QUALIFICATIONS:* 1. Proficiency coding in Matlab, Python, or R 2. Demonstrated interest in cognitive neuroscience research Interested candidates may apply online at https://secure-web.cisco.com/1wldJZ_Nw3f2XASAdXti-afFK0hYTKcIYRrtzeeaSycTIG… or email bdeen(a)tulane.edu with any questions about the position.

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Freesurfer VM password
by #ATILGAN HICRET# 04 Jul '22

04 Jul '22

External Email - Use Caution Hi, May I have a passcode to the zip folder for file FS_7_2_0_Ubuntu_18_04_06.ova.7z so that I can install free surfer virtual disk ? Best wishes, Hicret

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Password for FreeSurfer VM image
by Adrien Brilhault 04 Jul '22

04 Jul '22

External Email - Use Caution Hello, I've just downloaded the FS image to run on a VM, but the archive require a password to extract. Could someone please send me the key? Best

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Freesurfer VM 7zip passcode
by Mikolaj Pawlak 04 Jul '22

04 Jul '22

External Email - Use Caution Hello, I would like to ask for the passcode for the VM file containing FS7.2 thanks, Mikolaj Pawlak

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Freesurfer VM password
by Zixuan Lin 03 Jul '22

03 Jul '22

External Email - Use Caution Hello! I just downloaded the FS_7_2_0_ubuntu_18_04_06.ova.7z and would like to see if I can get the password to unzip this VM? Thanks a lot, Zixuan.

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trac-all -prep -c ERROR
by Salar Dini, Elaheh 03 Jul '22

03 Jul '22

External Email - Use Caution Dear experts, I am running TRACULA for 90 subjects. Exceptionally, for one of the subjects, I get the following error in -prep step: ((INFO: Distances between consecutive points in test subject's space are 10 13 12 13 13 12 WARN: Could not find satisfactory control point fit - try 17034 Writing output files to /home2/am2359/fs6_data/TRACULA/subjects_dir/47/dlabel/syn/lh.cst_avg16_syn_bbr_* Writing spline volume to /home2/am2359/fs6_data/TRACULA/subjects_dir/47/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Segmentation fault (core dumped) Linux tauruspet.med.yale.edu 3.10.0-693.el7.x86_64 #1 SMP Tue Aug 22 21:09:27 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux trac-preproc exited with ERRORS at Wed Jun 29 10:31:11 EDT 2022)) I am attaching the log file as well: https://secure-web.cisco.com/1SmnY7WYnV1XRZV1hzFK0-fljtz5hTgSEDuVurOZOZqB22… On a quick look, aparc+aseg seems to be properly done. Will you please help me to troubleshoot this if possible? Thank you, Ela

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segmentation corpus callosum
by Mostafa Fakhri 03 Jul '22

03 Jul '22

External Email - Use Caution Hello to all, I was wondering if I could create a binary mask of corpus callosum from T1w images in subject space with FS. Thanks for the help! Mostafa

2 1

Pass code for FS_7_2_0_Ubuntu_18_04_06.ova.7z
by Sharma, Maya 03 Jul '22

03 Jul '22

Hello, I am downloading Freesurfer on my Windows device; may I please have the pass code to expand the archive FS_7_2_0_Ubuntu_18_04_06.ova.7z Thank you kindly

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Freesurfer July 2022