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Hello Freesurfer Developpers,
I attempted to run mri_easyreg (Freesurfer 7.4) between two MP2RAGE UNI
images (acquired on a SIEMENS PRISMA 3T).
First, I did not include segmentations, as I understood that EasyReg
would run it for me.
But it didn't. I don't know why.
Then I first ran mri_synthseg with the --parc option on the two images.
I checked the results, and saw cortical labels on both hemispheres.
But when I ran again mri-easyreg adding these images (--ref_seg
--flo_reg), I get again the > no cortical parcels.
What did I do wong?
Any hints?
Thanks in advance for your help.
Best,
Eric