Freesurfer

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30091 discussions

issue about LME Matlab tools
by ting xu 13 Feb '13

13 Feb '13

Dear all, A few questions come to me when I used LME Matlab toolbox. Then Jorge kindly answered my questions and he also asked me to post our discussion to Freesurfer list so everyone knows what's going on here :) Cheers, Ting ------------------------------------------------------------------- *Subject: *Re: Re: issue about LME Matlab tools *Sent: *Tue, Dec 11, 2012 21:41:26 Hi Ting Please could you post this question to the Freesurfer list, so other people can benefit from this discussion? I'll answer you ASAP. Best -Jorge ------------------------------------------------------ *Subject: *Re: Re: issue about LME Matlab tools *Sent: *Wed, Dec 12, 2012 6:44:36 AM Hi Jorge, Thank you for your explanation in more details. I followed your suggestion, set the convergence epsilon to 10^-5. It truly improved. I am now running the whole brain data, estimations in several voxels were not converge after 50 iterations. Given that iterations takes more computational time, how many iterations do you recommend and what do you usually do if it still not converge? Thank you again:) Warmly regards, Ting ------------------------------------------------------ *Subject:* Re: issue about LME Matlab tools *Sent: *Wed, Dec 12, 2012 00:50:35 Hi Ting You needed more iterations to make the algorithm stop closer to the optimal values. Try: statsFS= lme_fit_FS(X,[1 2],Y,ni,10^-5); or the EM algorithm statsEM = lme_fit_EM(X,[1 2],Y,ni,10^-10); Neither of these algorithms can be guaranty to converge but I have found the FS algorithm to be the most robust and fast. For the mass-univariate setting we limited the number of iterations for the FS algorithm to only 20 due to computational time. Note that for only two repeated measures (as in your data) compound symmetry (a model with a single random effect for the intercept term) likely holds for the covariance matrix among the repeated measures. Although a likelihood ratio test here comparing the model with one random effects against the model with two random effects is barely significant it will not likely survive a multiple comparisons correction. You can not impose structure on D in our toolbox nor it is recommended for general longitudinal data. Let me know any doubt you might have. Best -Jorge ------------------------------------------------------ *Subject: *issue about LME Matlab tools *Sent: *Tue, Dec 11, 2012 14:47:14 Dear Dr. Sabuncu Your recent work "Statistical Analysis of Longitudinal Neuroimage Date with Linear Mixed Effects Models" provided us a great matlab toolbox to apply Mixed Model, especially for imaging data. Now, I am investigating the intraclass correlation based on this toolbox. Sometime I found the function "lme_fit_FS" could not get the accurate estimations. I think the problem may be relevant to the initial value from OLS method, in the case that the within-subject variability estimated from "lme_fit_init" is very close to zero. I attached an example. Y is test-retest imaging data for one voxel, X is design matrix including intercept, head_motion, age, gender. I set random effect for intercept and head_motion. I also attached result from SAS and the model is ok. stats = lme_fit_FS(X,[1,2],Y,ni); Here I'm wondering is there any way to fixed this in matlab? PS, though you have mentioned that no imposed structure on D (covariance matrix of random effect), I am curious if it is possible to define the structure of D in this toolbox. Thanks for your kind attention and look forward to your reply soon. Regards, Ting

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Re: [Freesurfer] ROI analysis and whitening in fsfast - Percent activity change
by Clark Fisher 13 Feb '13

13 Feb '13

Hi Doug, Thanks for the help, that seemed to worked great. I have a few follow up questions about how to process the resulting statistics. I'm still using v4.5 (can't switch to v5 yet), as I mentioned, and would like to get the % signal change for certain contrasts with error bars. Looking through the listserv, I see that the values in cespct.nii require correction by a scale factor in this version of fsfast. The most recent conversation I could find on this comes from 2010, when you told Thomas Janssens: Hi Thomas, you may have found a bug in my scale factor calculation. Can you compute the new scale factor as described below? BTW, these issues are fixed in version 5. cd bold/analysis x = load('X'); tirf = x.flac0.ev(3).tirf; Xirf = x.flac0.ev(3).Xirf; scalefOld = sum(Xirf .* repmat(tirf,[1 size(Xirf,2)])); TR = x.flac0.TR; dt = tirf(2)-tirf(1); scalefNew = sum(Xirf)*TR/dt; I can't find a follow up to this message. 2 questions. 1) The results with scalefNew look reasonable to me; do you still think that this is the proper way to adjust cespct.nii in v4.5? 2) If I want to put error bars on my % signal change, how do I scale the values in cesvarpct.nii? I would guess that if I wanted to put a 95% CI on my % signal change, it would be: (cespct * scalefNew) +/- ( sqrt(cesvarpct) * scalefNew * 1.96) and NOT (cespct * scalefNew) +/- ( sqrt(cesvarpct * scalefNew) * 1.96) Does this sound right, or am I misinterpreting what cesvarpct.nii contains? Thanks again, Clark Hi Clark, On 02/06/2013 05:55 PM, Clark Fisher wrote: > Hi everyone, > > In a previous discussion on this list > (http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg17681.html) > Pablo Polosecki was asking the best way to perform hypothesis testing > using functional data within an ROI. The final opinion was that it > was best to average all of the time courses in the ROI, and re-run the > analysis from scratch, so that all of the appropriate whitening, etc. > occurred. > > I was considering doing this, creating a small volume (say, 10 voxels > total) that had each voxel holding the average time course from one of > 10 ROIs. I would then set up and run a usual fsfast analysis using > these tiny volumes. I am using freesurfer 4.5. I have a few questions. > > 1) Is this reasonable? In general, it is reasonable. Though I'm curious what you are ultimately trying to do. Do you want p-values for each subject in each ROI? Or will you be combining the ROI beta values across subject in a group analysis? If so, then the whitening will probably make little, if any, difference, especially if this is a blocked design. In expectation, the whitening does not affect the beta values. > > 2) One area where I expect to run into problems is with the whitening. > If I set -acfbins to the total number of my dummy voxels, and > -acffwhm to 0, will this use the autocorrelation function of the > average timecourse within each individual ROI? Is that an appropriate > approach? How sensitive will this be to the number of actual voxels > averaged to get each ROI (for instance, would this bias me to finding > more significant results in ROIs containing fewer voxels?). That might work, but no promises! It is an appropriate approach. It might be sensitive to the number of voxels if the number is small (say, less than 100). > > 3) Are there other steps that depend upon the spatial arrangement of > voxels that I am forgetting, and will these steps choke on these small > volumes (or worse, fail in silent but pernicious ways). Nothing I can think of off the top of my head. doug > > Thanks for all of the help, > Clark > > > _______________________________________________ > Freesurfer mailing list > Freesurfer(a)nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...(a)nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer(a)nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

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(no subject)
by Rebecca Rada 13 Feb '13

13 Feb '13

Hello, We are trying to figure out how to expand the pial surface after FreeSurfer processing has occured. The processed brainmask.mgz has defined the gray matter as red, but the pial surface does not extend out to the red gray matter on a portion of the temporal lobe. Is there a way to expand the pial surface to include the gray matter that is currently not included in the final processed image? We have found information about how to minimize the pial surface if dura is included as gray matter, but we haven't found anything on how to increase the pial surface to include red gray matter voxels that were left out. Thank you so much, Rebecca

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R: Re: R: Re: R: Re: R: R: Re: R: trac-all -path error
by stdp82＠virgilio.it 13 Feb '13

13 Feb '13

Thank you very much Eugenio. Additionally I'm noting these file in dmri folder. Please, may you tell me if their location is correct. 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dif_brain_mask_slice_0171.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0172.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0173.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0174.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0175.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0176.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0177.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0178.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0179.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0180.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0181.nii.gz ----Messaggio originale---- Da: iglesias(a)nmr.mgh.harvard.edu Data: 13-feb-2013 15.18 A: <stdp82(a)virgilio.it> Cc: <freesurfer(a)nmr.mgh.harvard.edu>, <ayendiki(a)nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] R: Re: R: Re: R: R: Re: R: trac-all -path error Hi Stefano, Question: https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2012-August/025298.ht… Answer: https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2012-August/025303.ht… Hope this helps! /Eugenio On Wed, 2013-02-13 at 08:27 +0100, stdp82(a)virgilio.it wrote: > Hi Anastasia, > > > I have run another subject with the same error. > After finish bedposts > Queuing post processing stage > [iMac-di-Stefano:freesurfer/subjects/subject_prova] Stefano% trac-all > -path -c $FREESURFER_HOME/dmrirc_single_subject5 > INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects/subject_prova > INFO: Diffusion root > is /Applications/freesurfer/subjects/subject_prova > Actual FREESURFER_HOME /Applications/freesurfer > trac-paths > -c /Applications/freesurfer/subjects/subject_prova/Con05/scripts/dmrirc.local -log /Applications/freesurfer/subjects/subject_prova/Con05/scripts/trac-all.log -cmd /Applications/freesurfer/subjects/subject_prova/Con05/scripts/trac-all.cmd > #------------------------------------- > /Applications/freesurfer/bin/trac-paths > #------------------------------------- > #@# Path reconstruction Wed Feb 13 08:20:51 CET 2013 > /Applications/freesurfer/bin/dmri_paths > --outdir /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/su bjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cp ts/priormni/seg14/initmni/regflt/lh.slft_PP! _avg33_m ni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_flt --dwi /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz --grad /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecs --bval /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvals --mask /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/su bjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33 _mni_flt_end1_dil.nii.gz /Applications/free! surfer/s ubjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz --roi2 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh. unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/f reesurfer/subjects/subject_prova/Con05/dlab! el/mni/r h.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz --reg /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat --init /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prov a/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subject s/subject_prova/Con05/dlabel/diff/lh.slft_P! P_avg33_ mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt --nprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni _flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Ap plications/freesurfer/subjects/subject_prov! a/Con05/ dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slf p_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids --lprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg3 3_mni_flt_fsids /Applications/freesurfer/su! bjects/s ubject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_P P_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/ freesurfer/subjects/subject_prova/Con05/dla! bel/mni/ lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids --seg /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 > > > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_paths > --outdir /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/su bjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cp ts/priormni/seg14/initmni/regflt/lh.slft_PP! _avg33_m ni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_flt --dwi /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz --grad /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecs --bval /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvals --mask /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/su bjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33 _mni_flt_end1_dil.nii.gz /Applications/free! surfer/s ubjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz --roi2 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh. unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/f reesurfer/subjects/subject_prova/Con05/dlab! el/mni/r h.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz --reg /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat --init /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prov a/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subject s/subject_prova/Con05/dlabel/diff/lh.slft_P! P_avg33_ mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt --nprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni _flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Ap plications/freesurfer/subjects/subject_prov! a/Con05/ dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slf p_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids --lprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg3 3_mni_flt_fsids /Applications/freesurfer/su! bjects/s ubject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_P P_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/ freesurfer/subjects/subject_prova/Con05/dla! bel/mni/ lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids --seg /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Output > directory: /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/ subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5 cpts/priormni/seg14/initmni/regflt/lh.slft_! PP_avg33 _mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_flt > DWIs: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz > Gradients: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecs > B-values: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvals > Mask: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > BEDPOST > directory: /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX > Max number of tracts per voxel: 2 > Tract volume fraction threshold: 0.05 > Initial control point > file: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33 _mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt > End ROI > 1: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/ Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz > End ROI > 2: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/ Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz > Neighbor aseg > prior: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior > Neighbor aseg label ID > list: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesu rfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids > Local aseg > prior: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/frees urfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior > Local aseg label ID > list: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subjec t_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids > Segmentation > map: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz > Type of aseg prior: 0 > DWI-to-atlas affine > registration: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat > Number of burn-in samples: 200 > Number of post-burn-in samples: 5000 > Keep every: 5-th sample > Update proposal every: 0-th sample > Loading spline control points > from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt > Loading spline mask > from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > Creating output > directory /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt > Loading DWIs > from /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz > Loading mask > from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > Loading BEDPOST parameter samples > from /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX > niiRead(): error opening > file /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gz > ERROR: Could not > read /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gz > Darwin iMac-di-Stefano.local 12.2.1 Darwin Kernel Version 12.2.1: Thu > Oct 18 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64 > > > trac-paths exited with ERRORS at Wed Feb 13 08:20:52 CET 2013 > > > [iMac-di-Stefano:freesurfer/subjects/subject_prova] Stefano% > > Thanks, > > > Stefano > > > > > ----Messaggio originale---- > Da: ayendiki(a)nmr.mgh.harvard.edu > Data: 13-feb-2013 0.43 > A: <stdp82(a)virgilio.it> > Ogg: Re: R: Re: R: [Freesurfer] R: Re: R: trac-all -path error > > > Bedpostx hasn't finished running. You have to wait for it to finish. > > On Wed, 13 Feb 2013, stdp82(a)virgilio.it wrote: > > > Yes, I clearly understand it. > > I have this error after -path step > > > > Loading mask from > > > > > /Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > > > > Loading BEDPOST parameter samples from > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX > > > > niiRead(): error opening file > > > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > > > ERROR: Could not read > > > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > after prep and bedpostx I have these folder > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/mri/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri.bedpostX/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/scripts/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dpath/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dlabel/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/stats/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/label/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/rh.EC_average/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/lh.EC_average/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/fsaverage/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/touch/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/surf/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bem/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/src/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/tmp/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/trash/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bvecs.txt > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bvals.txt > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/data.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/MPRAGE.nii.gz > > > > > > particularly in dmri.bedpostx I have: > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat_mni.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat_orig.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/bvals > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/bvecs > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0000.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0001.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0002.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0003.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0004.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0005.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0006.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0007.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0008.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0009.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0010.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0011.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0012.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0013.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0014.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0015.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0016.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0017.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0018.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0019.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0020.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0021.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0022.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0023.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0024.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0025.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0026.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0027.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0028.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0029.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0030.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0031.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0032.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0033.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0034.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0035.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0036.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0037.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0038.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0039.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0040.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0041.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0042.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0043.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0044.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0045.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0046.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0047.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0048.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0049.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0050.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0051.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0052.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0053.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0054.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0055.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0056.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0057.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0058.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0059.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0060.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0061.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0062.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0063.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0064.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0065.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0066.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0067.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0068.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0069.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0070.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0071.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0072.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0073.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0074.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0075.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0076.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0077.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0078.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0079.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0080.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0081.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0082.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0083.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0084.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0085.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0086.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0087.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0088.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0089.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0090.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0091.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0092.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0093.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0094.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0095.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0096.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0097.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0098.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0099.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0100.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0101.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0102.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0103.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0104.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0105.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0106.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0107.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0108.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0109.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0110.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0111.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0112.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0113.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0114.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0115.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0116.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0117.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0118.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0119.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0120.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0121.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0122.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0123.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0124.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0125.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0126.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0127.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0128.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0129.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0130.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0131.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0132.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0133.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0134.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0135.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0136.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0137.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0138.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0139.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0140.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0141.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0142.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0143.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0144.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0145.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0146.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0147.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0148.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0149.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0150.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0151.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0152.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0153.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0154.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0155.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0156.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0157.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0158.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0159.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0160.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0161.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0162.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0163.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0164.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0165.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0166.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0167.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0168.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0169.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0170.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0171.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0172.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0173.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0174.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0175.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0176.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0177.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0178.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0179.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0180.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0181.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_FA.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_L1.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_L2.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_L3.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_MD.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_MO.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_S0.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_V1.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_V2.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_V3.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig_flip.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig.mghdti.bvals > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig.mghdti.bvecs > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_snr.txt > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi.ecclog > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb_brain_anat.flt.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb_brain_mni.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb_brain.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/mni/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0000.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0001.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0002.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0003.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0004.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0005.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0006.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0007.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0008.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0009.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0010.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0011.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0012.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0013.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0014.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0015.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0016.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0017.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0018.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0019.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0020.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0021.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0022.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0023.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0024.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0025.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0026.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0027.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0028.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0029.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0030.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0031.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0032.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0033.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0034.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0035.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0036.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0037.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0038.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0039.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0040.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0041.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0042.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0043.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0044.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0045.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0046.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0047.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0048.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0049.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0050.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0051.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0052.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0053.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0054.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0055.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0056.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0057.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0058.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0059.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0060.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0061.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0062.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0063.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0064.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0065.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0066.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0067.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0068.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0069.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0070.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0071.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0072.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0073.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0074.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0075.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0076.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0077.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0078.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0079.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0080.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0081.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0082.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0083.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0084.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0085.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0086.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0087.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0088.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0089.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0090.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0091.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0092.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0093.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0094.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0095.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0096.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0097.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0098.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0099.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0100.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0101.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0102.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0103.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0104.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0105.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0106.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0107.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0108.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0109.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0110.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0111.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0112.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0113.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0114.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0115.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0116.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0117.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0118.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0119.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0120.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0121.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0122.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0123.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0124.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0125.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0126.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0127.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0128.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0129.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0130.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0131.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0132.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0133.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0134.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0135.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0136.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0137.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0138.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0139.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0140.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0141.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0142.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0143.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0144.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0145.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0146.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0147.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0148.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0149.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0150.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0151.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0152.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0153.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0154.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0155.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0156.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0157.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0158.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0159.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0160.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0161.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0162.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0163.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0164.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0165.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0166.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0167.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0168.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0169.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0170.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0171.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0172.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0173.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0174.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0175.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0176.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0177.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0178.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0179.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0180.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0181.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/xfms/ > > > Segmentation > map: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz > Type of aseg prior: 0 > DWI-to-atlas affine > registration: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat > Number of burn-in samples: 200 > Number of post-burn-in samples: 5000 > Keep every: 5-th sample > Update proposal every: 0-th sample > Loading spline control points > from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt > Loading spline mask > from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > Creating output > directory /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt > Loading DWIs > from /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz > Loading mask > from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > Loading BEDPOST parameter samples > from /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX > niiRead(): error opening > file /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gz > ERROR: Could not > read /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gz > Darwin iMac-di-Stefano.local 12.2.1 Darwin Kernel Version 12.2.1: Thu > Oct 18 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64 > > > trac-paths exited with ERRORS at Wed Feb 13 08:20:52 CET 2013 > > Thanks, > > > > > > Stefano > > > > > > > > ----Messaggio originale---- > > Da: ayendiki(a)nmr.mgh.harvard.edu > > Data: 13-feb-2013 0.06 > > A: <stdp82(a)virgilio.it> > > Cc: <freesurfer(a)nmr.mgh.harvard.edu> > > Ogg: Re: R: [Freesurfer] R: Re: R: trac-all -path error > > > > > > Hi Stefano - The order of the 3 trac-all steps is not > inter-changeable. > > You need to run bedpostx *before* you can run the path > reconstruction. > > > > a.y > > > > On Wed, 13 Feb 2013, stdp82(a)virgilio.it wrote: > > > > > Thank you Anastasia. But I do not understand why I have the error > in trac-all -path. The configuration > > file > > > that I have attached is good? > > > Stefano > > > > > > ----Messaggio originale---- > > > Da: stdp82(a)virgilio.it > > > Data: 12-feb-2013 23.27 > > > A: <ayendiki(a)nmr.mgh.harvard.edu> > > > Cc: <freesurfer(a)nmr.mgh.harvard.edu> > > > Ogg: [Freesurfer] R: Re: R: trac-all -path error > > > > > > Hi Anastasia, > > > thanks! I hope that is all ok in Boston. > > > > > > I'm attaching the configuration file that I'm using. > > > > > > I'd like ask you if/how I can also run the second step of trac-all > (bedpostx) using FSL on other pc? May I > > > directly run in FSL dmri folder? Do you think that I should rename > some files? > > > > > > An additional question. For some subjects (no for subject that I'm > running with the config file that I > > have > > > attached) I have 16 direction and b=0 is the last of these. Is the > nb0=16? > > > > > > Thank you very much. > > > > > > > > > Stefano > > > > > > > > > > > > ----Messaggio originale---- > > > Da: ayendiki(a)nmr.mgh.harvard.edu > > > Data: 12-feb-2013 17.45 > > > A: <stdp82(a)virgilio.it> > > > Cc: <freesurfer(a)nmr.mgh.harvard.edu> > > > Ogg: Re: [Freesurfer] R: trac-all -path error > > > > > > > > > Hi Stefano - There is no need to attach the trac-all script, I am > quite > > > familiar with it. Perhaps you could attach the configuration file > that you > > > set up? > > > > > > Thanks, > > > a.y > > > > > > On Mon, 11 Feb 2013, stdp82(a)virgilio.it wrote: > > > > > > > I'm attaching my trac-all file for check.Thanks, > > > > > > > > Stefano > > > > > > > > ----Messaggio originale---- > > > > Da: stdp82(a)virgilio.it > > > > Data: 11-feb-2013 14.42 > > > > A: <freesurfer(a)nmr.mgh.harvard.edu> > > > > Cc: <ayendiki(a)nmr.mgh.harvard.edu> > > > > Ogg: [Freesurfer] trac-all -path error > > > > > > > > Hi list, > > > > I'm running trac-all -path -c $FREESURFER/dmrirc_single_subject > but I have this error: > > > > > > > > Loading mask from > > > > > /Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > > > > Loading BEDPOST parameter samples from > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX > > > > niiRead(): error opening file > > > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > > > ERROR: Could not read > > > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > > > > > > > > From http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg22066.html > > > > I'm deducing that the error may be related trace-all upload. > > > > > > > > I have doing this upload but I visualize always the same error. > > > > > > > > I attached tract-all uploades file that live > in /Applications/freesurfer/bin. > > > > > > > > Please, could you check it? > > > > > > > > I have also other question. May I run the second step of > trac-all (bedpostx) using FSL on other pc? In > > > this > > > > way, could I directly run in FSL dmri folder? Do you think that > I should rename some files? > > > > > > > > Thanks, > > > > > > > > > > > > Stefano > > > > > > > > > > > > > > > >_______________________________________________ > > > Freesurfer mailing list > > > Freesurfer(a)nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > The information in this e-mail is intended only for the person to > whom it is > > > addressed. If you believe this e-mail was sent to you in error and > the e-mail > > > contains patient information, please contact the Partners > Compliance HelpLine at > > > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > > > but does not contain patient information, please contact the > sender and properly > > > dispose of the e-mail. > > > > > > > > > > > > > > > > > > > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer(a)nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- ------------------------------------------------------------------------------------- Juan Eugenio Iglesias, PhD http://www.jeiglesias.com iglesias(a)nmr.mgh.harvard.edu Athinoula A. Martinos Center for Biomedical Imaging Department of Radiology, MGH, Harvard Medical School 149 Thirteenth Street, Suite 2301 Charlestown, Massachusetts 2129 U.S.A. _______________________________________________ Freesurfer mailing list Freesurfer(a)nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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Re: [Freesurfer] A question regarding a "nii-read" error I get when running a script for FA values output
by Rotem Saar 13 Feb '13

13 Feb '13

Dear Douglas, Thank you very much for your help, It seems to work now. I got a table with all the FA values, for each segment, but I suspect a problem: I think that the values are too high (I set the threshold to 0.2-1), am I right ? I'm attaching the table I got, and to be specific, I'm very much interested in the Corpus-Colosseum values, which are high (not surprising) but when I wanted to validate with some other structures, like the "left putamen" I saw 0.53 which is to my opinion too high ? I would really appreciate if you can have a look at the table I attached here. Thanks ! Rotem 2013/2/12 <freesurfer-request(a)nmr.mgh.harvard.edu> > Send Freesurfer mailing list submissions to > freesurfer(a)nmr.mgh.harvard.edu > > To subscribe or unsubscribe via the World Wide Web, visit > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > or, via email, send a message with subject or body 'help' to > freesurfer-request(a)nmr.mgh.harvard.edu > > You can reach the person managing the list at > freesurfer-owner(a)nmr.mgh.harvard.edu > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Freesurfer digest..." > > > Today's Topics: > > 1. Re: LME matlab toolbox - smooth error (jorge luis) > 2. Re: mean cortical thickness of significant clusters in qdec > (Douglas N Greve) > 3. Re: A question regarding a "nii-read" error I get when > running a script for FA values output (Douglas N Greve) > 4. Re: Temporal lobes not included (Kristina Nalbandian) > 5. Re: Temporal lobes not included (Bruce Fischl) > 6. Re: Temporal lobes not included (Douglas N Greve) > 7. Re: Freesurfer 5.2 CentOS 4 aparcstats2table error > (Nick Schmansky) > 8. mc-sess Error (Daniel Cole) > 9. Re: mc-sess Error (Douglas N Greve) > 10. glmfit-sim trouble (Gabriel Gonzalez Escamilla) > 11. Re: Freesurfer 5.2 CentOS 4 aparcstats2table error > (Garikoitz Lerma-Usabiaga) > 12. average subject (Linn Mittlestein) > 13. preparing NHP data for whole brain analysis > (Caspar M. Schwiedrzik) > 14. Post-Doctoral position in brain imaging and computational > morphometry ? University of Geneva (Narly Golestani) > 15. error when using stats import in qdec (Catherine Bois) > 16. Fwd: error when using stats import in qdec (Catherine Bois) > 17. Re: Fwd: error when using stats import in qdec (Catherine Bois) > 18. Re: Fwd: error when using stats import in qdec (Nick Schmansky) > 19. Re: Fwd: error when using stats import in qdec (Nick Schmansky) > 20. trac-all problem (Jon Wieser) > 21. two sample t-test of paired differences (J?rg Pfannm?ller) > 22. Re: average subject (Bruce Fischl) > 23. Re: average subject (Linn Mittlestein) > 24. Re: average subject (Douglas N Greve) > 25. Basic skullstrip Inquiry (Gabriel Obregon) > 26. Re: two sample t-test of paired differences (Douglas N Greve) > 27. Parallelizing on a different kind of cluster (Susan Kuo) > 28. Re: mean cortical thickness of significant clusters in qdec > (Douglas N Greve) > 29. Re: trac-all -path error (Anastasia Yendiki) > 30. Re: R: trac-all -path error (Anastasia Yendiki) > 31. Re: preparing NHP data for whole brain analysis (Douglas N Greve) > 32. Re: trac-all problem (Anastasia Yendiki) > 33. Re: Parallelizing on a different kind of cluster > (Anastasia Yendiki) > 34. Re: Troubleshooting the preproc (Anastasia Yendiki) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Mon, 11 Feb 2013 16:57:09 +0000 (GMT) > From: jorge luis <jbernal0019(a)yahoo.es> > Subject: Re: [Freesurfer] LME matlab toolbox - smooth error > To: Yolanda Vives <yvives(a)pic.es>, "freesurfer(a)nmr.mgh.harvard.edu" > <freesurfer(a)nmr.mgh.harvard.edu> > Message-ID: > <1360601829.82122.YahooMailNeo(a)web172101.mail.ir2.yahoo.com> > Content-Type: text/plain; charset="iso-8859-1" > > > > Hi Yolanda > > This is one of a few scripts in LME that requires an extra Matlab toolbox > (maybe the only, besides the statistic toolbox). As it is documented in its > header you are require to have the curve fitting toolbox installed to run > it successfully. > > Best > -Jorge > > > > > > > >________________________________ > > De: Yolanda Vives <yvives(a)pic.es> > >Para: freesurfer(a)nmr.mgh.harvard.edu > >Enviado: Lunes 11 de febrero de 2013 6:14 > >Asunto: [Freesurfer] LME matlab toolbox - smooth error > > > >Dear all > > > >I am a new user of the LME matlab toolbox and I have an error when > >running lme_lowessPlot due to the smooth function. Do I need a > >particular matlab toolbox to run this function? I have not seen any > >smooth function in the LME toolbox. > > > >Error in ==> lme_lowessPlot at 49 > >? ? ybw = smooth(st,dat(ix),bw,'rlowess'); > > > >Error in ==> LME at 14 > >lme_lowessPlot(M(:,1),Y(:,1)+Y(:,2),0.70,M(:,2)); > > > >Thank you in advance, > >Yolanda > >_______________________________________________ > >Freesurfer mailing list > >Freesurfer(a)nmr.mgh.harvard.edu > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >The information in this e-mail is intended only for the person to whom it > is > >addressed. If you believe this e-mail was sent to you in error and the > e-mail > >contains patient information, please contact the Partners Compliance > HelpLine at > >http://www.partners.org/complianceline . If the e-mail was sent to you > in error > >but does not contain patient information, please contact the sender and > properly > >dispose of the e-mail. > > > > > > > > >

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R: Re: R: Re: R: R: Re: R: trac-all -path error
by stdp82＠virgilio.it 13 Feb '13

13 Feb '13

Hi Anastasia, I have run another subject with the same error.After finish bedpostsQueuing post processing stage[iMac-di-Stefano:freesurfer/subjects/subject_prova] Stefano% trac-all -path -c $FREESURFER_HOME/dmrirc_single_subject5INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects/subject_provaINFO: Diffusion root is /Applications/freesurfer/subjects/subject_provaActual FREESURFER_HOME /Applications/freesurfertrac-paths -c /Applications/freesurfer/subjects/subject_prova/Con05/scripts/dmrirc.local -log /Applications/freesurfer/subjects/subject_prova/Con05/scripts/trac-all.log -cmd /Applications/freesurfer/subjects/subject_prova/Con05/scripts/trac-all.cmd#-------------------------------------/Applications/freesurfer/bin/trac-paths #-------------------------------------#@# Path reconstruction Wed Feb 13 08:20:51 CET 2013/Applications/freesurfer/bin/dmri_paths --outdir /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_flt --dwi /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz --grad /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecs --bval /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvals --mask /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz --roi2 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz --reg /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat --init /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt --nprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids --lprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids --seg /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_paths --outdir /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_flt --dwi /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz --grad /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecs --bval /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvals --mask /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz --roi2 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz --reg /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat --init /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt --nprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids --lprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids --seg /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoOutput directory: /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_fltDWIs: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gzGradients: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecsB-values: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvalsMask: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gzBEDPOST directory: /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostXMax number of tracts per voxel: 2Tract volume fraction threshold: 0.05Initial control point file: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txtEnd ROI 1: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gzEnd ROI 2: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gzNeighbor aseg prior: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnpriorNeighbor aseg label ID list: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnidsLocal aseg prior: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fspriorLocal aseg label ID list: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsidsSegmentation map: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gzType of aseg prior: 0DWI-to-atlas affine registration: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.matNumber of burn-in samples: 200Number of post-burn-in samples: 5000Keep every: 5-th sampleUpdate proposal every: 0-th sampleLoading spline control points from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txtLoading spline mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gzCreating output directory /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_fltLoading DWIs from /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gzLoading mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gzLoading BEDPOST parameter samples from /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostXniiRead(): error opening file /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gzERROR: Could not read /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gzDarwin iMac-di-Stefano.local 12.2.1 Darwin Kernel Version 12.2.1: Thu Oct 18 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64 trac-paths exited with ERRORS at Wed Feb 13 08:20:52 CET 2013 [iMac-di-Stefano:freesurfer/subjects/subject_prova] Stefano% Thanks, Stefano ----Messaggio originale---- Da: ayendiki(a)nmr.mgh.harvard.edu Data: 13-feb-2013 0.43 A: <stdp82(a)virgilio.it> Ogg: Re: R: Re: R: [Freesurfer] R: Re: R: trac-all -path error Bedpostx hasn't finished running. You have to wait for it to finish. On Wed, 13 Feb 2013, stdp82(a)virgilio.it wrote: > Yes, I clearly understand it. > I have this error after -path step > > > Loading mask from > > > /Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > > > Loading BEDPOST parameter samples from > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX > > > niiRead(): error opening file > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > > ERROR: Could not read > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > after prep and bedpostx I have these folder > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/mri/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri.bedpostX/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/scripts/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dpath/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dlabel/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/stats/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/label/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/rh.EC_average/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/lh.EC_average/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/fsaverage/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/touch/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/surf/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bem/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/src/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/tmp/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/trash/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bvecs.txt > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bvals.txt > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/data.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/MPRAGE.nii.gz > > > particularly in dmri.bedpostx I have: > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat_mni.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat_orig.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/bvals > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/bvecs > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0000.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0001.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0002.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0003.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0004.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0005.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0006.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0007.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0008.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0009.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0010.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0011.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0012.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0013.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0014.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0015.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0016.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0017.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0018.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0019.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0020.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0021.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0022.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0023.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0024.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0025.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0026.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0027.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0028.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0029.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0030.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0031.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0032.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0033.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0034.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0035.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0036.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0037.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0038.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0039.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0040.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0041.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0042.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0043.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0044.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0045.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0046.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0047.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0048.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0049.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0050.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0051.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0052.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0053.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0054.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0055.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0056.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0057.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0058.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0059.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0060.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0061.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0062.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0063.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0064.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0065.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0066.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0067.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0068.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0069.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0070.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0071.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0072.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0073.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0074.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0075.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0076.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0077.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0078.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0079.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0080.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0081.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0082.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0083.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0084.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0085.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0086.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0087.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0088.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0089.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0090.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0091.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0092.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0093.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0094.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0095.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0096.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0097.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0098.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0099.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0100.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0101.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0102.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0103.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0104.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0105.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0106.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0107.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0108.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0109.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0110.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0111.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0112.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0113.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0114.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0115.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0116.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0117.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0118.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0119.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0120.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0121.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0122.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0123.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0124.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0125.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0126.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0127.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0128.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0129.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0130.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0131.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0132.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0133.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0134.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0135.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0136.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0137.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0138.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0139.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0140.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0141.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0142.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0143.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0144.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0145.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0146.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0147.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0148.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0149.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0150.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0151.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0152.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0153.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0154.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0155.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0156.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0157.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0158.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0159.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0160.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0161.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0162.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0163.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0164.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0165.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0166.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0167.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0168.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0169.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0170.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0171.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0172.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0173.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0174.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0175.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0176.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0177.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0178.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0179.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0180.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0181.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_FA.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_L1.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_L2.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_L3.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_MD.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_MO.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_S0.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_V1.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_V2.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_V3.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig_flip.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig.mghdti.bvals > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig.mghdti.bvecs > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_snr.txt > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi.ecclog > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb_brain_anat.flt.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb_brain_mni.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb_brain.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/mni/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0000.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0001.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0002.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0003.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0004.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0005.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0006.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0007.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0008.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0009.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0010.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0011.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0012.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0013.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0014.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0015.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0016.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0017.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0018.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0019.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0020.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0021.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0022.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0023.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0024.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0025.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0026.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0027.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0028.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0029.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0030.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0031.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0032.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0033.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0034.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0035.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0036.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0037.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0038.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0039.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0040.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0041.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0042.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0043.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0044.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0045.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0046.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0047.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0048.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0049.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0050.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0051.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0052.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0053.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0054.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0055.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0056.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0057.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0058.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0059.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0060.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0061.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0062.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0063.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0064.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0065.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0066.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0067.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0068.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0069.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0070.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0071.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0072.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0073.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0074.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0075.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0076.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0077.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0078.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0079.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0080.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0081.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0082.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0083.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0084.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0085.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0086.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0087.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0088.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0089.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0090.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0091.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0092.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0093.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0094.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0095.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0096.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0097.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0098.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0099.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0100.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0101.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0102.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0103.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0104.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0105.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0106.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0107.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0108.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0109.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0110.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0111.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0112.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0113.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0114.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0115.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0116.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0117.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0118.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0119.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0120.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0121.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0122.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0123.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0124.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0125.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0126.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0127.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0128.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0129.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0130.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0131.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0132.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0133.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0134.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0135.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0136.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0137.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0138.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0139.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0140.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0141.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0142.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0143.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0144.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0145.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0146.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0147.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0148.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0149.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0150.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0151.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0152.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0153.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0154.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0155.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0156.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0157.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0158.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0159.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0160.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0161.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0162.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0163.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0164.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0165.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0166.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0167.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0168.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0169.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0170.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0171.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0172.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0173.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0174.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0175.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0176.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0177.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0178.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0179.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0180.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0181.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/xfms/ > Segmentation map: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gzType of aseg prior: 0DWI-to-atlas affine registration: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.matNumber of burn-in samples: 200Number of post-burn-in samples: 5000Keep every: 5-th sampleUpdate proposal every: 0-th sampleLoading spline control points from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txtLoading spline mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gzCreating output directory /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_fltLoading DWIs from /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gzLoading mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gzLoading BEDPOST parameter samples from /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostXniiRead(): error opening file /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gzERROR: Could not read /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gzDarwin iMac-di-Stefano.local 12.2.1 Darwin Kernel Version 12.2.1: Thu Oct 18 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64 trac-paths exited with ERRORS at Wed Feb 13 08:20:52 CET 2013> Thanks, > > > Stefano > > > > ----Messaggio originale---- > Da: ayendiki(a)nmr.mgh.harvard.edu > Data: 13-feb-2013 0.06 > A: <stdp82(a)virgilio.it> > Cc: <freesurfer(a)nmr.mgh.harvard.edu> > Ogg: Re: R: [Freesurfer] R: Re: R: trac-all -path error > > > Hi Stefano - The order of the 3 trac-all steps is not inter-changeable. > You need to run bedpostx *before* you can run the path reconstruction. > > a.y > > On Wed, 13 Feb 2013, stdp82(a)virgilio.it wrote: > > > Thank you Anastasia. But I do not understand why I have the error in trac-all -path. The configuration > file > > that I have attached is good? > > Stefano > > > > ----Messaggio originale---- > > Da: stdp82(a)virgilio.it > > Data: 12-feb-2013 23.27 > > A: <ayendiki(a)nmr.mgh.harvard.edu> > > Cc: <freesurfer(a)nmr.mgh.harvard.edu> > > Ogg: [Freesurfer] R: Re: R: trac-all -path error > > > > Hi Anastasia, > > thanks! I hope that is all ok in Boston. > > > > I'm attaching the configuration file that I'm using. > > > > I'd like ask you if/how I can also run the second step of trac-all (bedpostx) using FSL on other pc? May I > > directly run in FSL dmri folder? Do you think that I should rename some files? > > > > An additional question. For some subjects (no for subject that I'm running with the config file that I > have > > attached) I have 16 direction and b=0 is the last of these. Is the nb0=16? > > > > Thank you very much. > > > > > > Stefano > > > > > > > > ----Messaggio originale---- > > Da: ayendiki(a)nmr.mgh.harvard.edu > > Data: 12-feb-2013 17.45 > > A: <stdp82(a)virgilio.it> > > Cc: <freesurfer(a)nmr.mgh.harvard.edu> > > Ogg: Re: [Freesurfer] R: trac-all -path error > > > > > > Hi Stefano - There is no need to attach the trac-all script, I am quite > > familiar with it. Perhaps you could attach the configuration file that you > > set up? > > > > Thanks, > > a.y > > > > On Mon, 11 Feb 2013, stdp82(a)virgilio.it wrote: > > > > > I'm attaching my trac-all file for check.Thanks, > > > > > > Stefano > > > > > > ----Messaggio originale---- > > > Da: stdp82(a)virgilio.it > > > Data: 11-feb-2013 14.42 > > > A: <freesurfer(a)nmr.mgh.harvard.edu> > > > Cc: <ayendiki(a)nmr.mgh.harvard.edu> > > > Ogg: [Freesurfer] trac-all -path error > > > > > > Hi list, > > > I'm running trac-all -path -c $FREESURFER/dmrirc_single_subject but I have this error: > > > > > > Loading mask from > > > /Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > > > Loading BEDPOST parameter samples from > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX > > > niiRead(): error opening file > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > > ERROR: Could not read > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > > > > > From http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg22066.html > > > I'm deducing that the error may be related trace-all upload. > > > > > > I have doing this upload but I visualize always the same error. > > > > > > I attached tract-all uploades file that live in /Applications/freesurfer/bin. > > > > > > Please, could you check it? > > > > > > I have also other question. May I run the second step of trac-all (bedpostx) using FSL on other pc? In > > this > > > way, could I directly run in FSL dmri folder? Do you think that I should rename some files? > > > > > > Thanks, > > > > > > > > > Stefano > > > > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer(a)nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom it is > > addressed. If you believe this e-mail was sent to you in error and the e-mail > > contains patient information, please contact the Partners Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you in error > > but does not contain patient information, please contact the sender and properly > > dispose of the e-mail. > > > > > > > > > > > > > > >

2 1

preparing NHP data for whole brain analysis
by Caspar M. Schwiedrzik 12 Feb '13

12 Feb '13

Dear Freesurfer experts, I am trying to prepare some NHP functional data for a whole brain group analysis, and I was wondering which sequence of steps you would recommend, given that the data cannot be processed with recon-all. I have surfaces from 4 subjects, but one subject for which I do not have an anatomy of sufficient quality and won't be able to obtain one. I would also like to align the data to the 112RM atlas by Mclaren et al. I was thinking that I could probably align the functional data per subject to the atlas, and then use this registration with func2sph-sess to align all subjects for the group analysis (again to the atlas). Does that make sense, given that I have only four out of five individual surfaces? A second question is when to smooth the data. I assume that it makes most sense to smooth it after it has been transformed into surface space. Would that be sphsmooth-sess? Finally, when doing the analysis, I would use isxavg-re-sess or isxavg-fe- sess, correct? I am using Freesurfer v5.1. Thank you very much for your advice, Caspar

3 7

matrix design to homogeneity of slopes designs
by jm 12 Feb '13

12 Feb '13

Hi fs experts, I need to execute *mri_glmfit* with -X option to probe interactions between Diagnosis and Age, Statistic Software help suggest: The*homogeneity of slopes designs* can be used to test whether the continuous and categorical predictors interact in influencing responses, and thus, whether the traditional ANCOVA design or the separate slope <file:///textbook/general-linear-models/#between_subject> design is appropriate for modeling the effects of the predictor. for 2 groups thickness = b_0 + b_1 X_1 + b_2 X_2 + b_3 * Age + b4 X1*Age + b5 x2*Age the Matrix Design Xm _corresponding 1 1 0 56 56 0 1 1 0 67 67 0 1 1 0 67 67 0 1 1 0 78 78 0 1 1 0 67 67 0 1 1 0 87 87 0 1 0 1 67 0 67 1 0 1 66 0 66 1 0 1 65 0 65 1 0 1 87 0 87 1 0 1 45 0 45 1 0 1 77 0 77 In matrix design generated by freesurfer _*file Xg.dat*_ for both DODS and DOSS the first column don't appears. Constant term "is not explicitly considered" my question is: is correct to use *mri_glmfit* with -X Xm as above specified ? or I need to eliminate the first column? 1 0 56 56 0 1 0 67 67 0 1 0 67 67 0 1 0 78 78 0 1 0 67 67 0 1 0 87 87 0 0 1 67 0 67 0 1 66 0 66 0 1 65 0 65 0 1 87 0 87 0 1 45 0 45 0 1 77 0 77 thanks!!

2 1

R: R: Re: R: trac-all -path error
by stdp82＠virgilio.it 12 Feb '13

12 Feb '13

Thank you Anastasia. But I do not understand why I have the error in trac-all -path. The configuration file that I have attached is good? Stefano ----Messaggio originale---- Da: stdp82(a)virgilio.it Data: 12-feb-2013 23.27 A: <ayendiki(a)nmr.mgh.harvard.edu> Cc: <freesurfer(a)nmr.mgh.harvard.edu> Ogg: [Freesurfer] R: Re: R: trac-all -path error Hi Anastasia, thanks! I hope that is all ok in Boston. I'm attaching the configuration file that I'm using. I'd like ask you if/how I can also run the second step of trac-all (bedpostx) using FSL on other pc? May I directly run in FSL dmri folder? Do you think that I should rename some files? An additional question. For some subjects (no for subject that I'm running with the config file that I have attached) I have 16 direction and b=0 is the last of these. Is the nb0=16? Thank you very much. Stefano ----Messaggio originale---- Da: ayendiki(a)nmr.mgh.harvard.edu Data: 12-feb-2013 17.45 A: <stdp82(a)virgilio.it> Cc: <freesurfer(a)nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] R: trac-all -path error Hi Stefano - There is no need to attach the trac-all script, I am quite familiar with it. Perhaps you could attach the configuration file that you set up? Thanks, a.y On Mon, 11 Feb 2013, stdp82(a)virgilio.it wrote: > I'm attaching my trac-all file for check.Thanks, > > Stefano > > ----Messaggio originale---- > Da: stdp82(a)virgilio.it > Data: 11-feb-2013 14.42 > A: <freesurfer(a)nmr.mgh.harvard.edu> > Cc: <ayendiki(a)nmr.mgh.harvard.edu> > Ogg: [Freesurfer] trac-all -path error > > Hi list, > I'm running trac-all -path -c $FREESURFER/dmrirc_single_subject but I have this error: > > Loading mask from > /Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > Loading BEDPOST parameter samples from /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX > niiRead(): error opening file > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > ERROR: Could not read > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > From http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg22066.html > I'm deducing that the error may be related trace-all upload. > > I have doing this upload but I visualize always the same error. > > I attached tract-all uploades file that live in /Applications/freesurfer/bin. > > Please, could you check it? > > I have also other question. May I run the second step of trac-all (bedpostx) using FSL on other pc? In this > way, could I directly run in FSL dmri folder? Do you think that I should rename some files? > > Thanks, > > > Stefano > > > >_______________________________________________ Freesurfer mailing list Freesurfer(a)nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

2 1

R: Re: R: trac-all -path error
by stdp82＠virgilio.it 12 Feb '13

12 Feb '13

Hi Anastasia, thanks! I hope that is all ok in Boston. I'm attaching the configuration file that I'm using. I'd like ask you if/how I can also run the second step of trac-all (bedpostx) using FSL on other pc? May I directly run in FSL dmri folder? Do you think that I should rename some files? An additional question. For some subjects (no for subject that I'm running with the config file that I have attached) I have 16 direction and b=0 is the last of these. Is the nb0=16? Thank you very much. Stefano ----Messaggio originale---- Da: ayendiki(a)nmr.mgh.harvard.edu Data: 12-feb-2013 17.45 A: <stdp82(a)virgilio.it> Cc: <freesurfer(a)nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] R: trac-all -path error Hi Stefano - There is no need to attach the trac-all script, I am quite familiar with it. Perhaps you could attach the configuration file that you set up? Thanks, a.y On Mon, 11 Feb 2013, stdp82(a)virgilio.it wrote: > I'm attaching my trac-all file for check.Thanks, > > Stefano > > ----Messaggio originale---- > Da: stdp82(a)virgilio.it > Data: 11-feb-2013 14.42 > A: <freesurfer(a)nmr.mgh.harvard.edu> > Cc: <ayendiki(a)nmr.mgh.harvard.edu> > Ogg: [Freesurfer] trac-all -path error > > Hi list, > I'm running trac-all -path -c $FREESURFER/dmrirc_single_subject but I have this error: > > Loading mask from > /Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > Loading BEDPOST parameter samples from /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX > niiRead(): error opening file > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > ERROR: Could not read > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > From http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg22066.html > I'm deducing that the error may be related trace-all upload. > > I have doing this upload but I visualize always the same error. > > I attached tract-all uploades file that live in /Applications/freesurfer/bin. > > Please, could you check it? > > I have also other question. May I run the second step of trac-all (bedpostx) using FSL on other pc? In this > way, could I directly run in FSL dmri folder? Do you think that I should rename some files? > > Thanks, > > > Stefano > > > >_______________________________________________ Freesurfer mailing list Freesurfer(a)nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

2 1

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