Freesurfer

freesurfer@nmr.mgh.harvard.edu

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Re: [Freesurfer] MRI image quality metrics
by fsbuild 17 Feb '23

17 Feb '23

External Email - Use Caution We provide example subjects, like bert, as part of the freesurfer distribution.  But the install location on the Mac (and linux) is usually write protected and so while you can read data from there, you can’t write data there.   You can place your own subject data - or copy the subject data provided in the fresurfer distribution - to somewhere you can write to like your home directory, e.g. … copy in the data … $ cd $HOME$ rm -rf subjects$ (cd /Applications/freesurfer/7.1.1; tar cpf - subjects) | tar xpf - … check it is there … $ ls -d subjects/bert/statssubjects/bert/stats … reset SUBJECTS_DIR to the new location where you can both read and write data … $ export SUBJECTS_DIR=$HOME/subjects … try the command again … $ wm-anat-snr --s bert - R. On Feb 17, 2023, at 19:43, MANSON ERIC NAAB <enmanson(a)st.ug.edu.gh> wrote:        External Email - Use Caution        Thank you once again for your reply. After running the command wm-anat-snr --s <subject name> to determine the white matter signal-to-noise ratio, I receive an error about the output. It fails to write the output. Please, how do I solve this?MACs-MacBook-Pro:~ mac$  export FREESURFER_HOME=/Applications/freesurfer/7.1.1MACs-MacBook-Pro:~ mac$ export SUBJECTS_DIR=$FREESURFER_HOME/subjectsMACs-MacBook-Pro:~ mac$ source $FREESURFER_HOME/SetUpFreeSurfer.sh -------- freesurfer-darwin-macOS-7.1.1-20200811-8b40551 --------Setting up environment for FreeSurfer/FS-FAST (and FSL)FREESURFER_HOME   /Applications/freesurfer/7.1.1FSFAST_HOME       /Applications/freesurfer/7.1.1/fsfastFSF_OUTPUT_FORMAT nii.gzSUBJECTS_DIR      /Applications/freesurfer/7.1.1/subjectsMNI_DIR           /Applications/freesurfer/7.1.1/mniFSL_DIR           /Users/mac/fslMACs-MacBook-Pro:~ mac$ cd $SUBJECTS_DIRMACs-MacBook-Pro:subjects mac$ wm-anat-snr --s bertERROR: cannot write to /Applications/freesurfer/7.1.1/subjects/bert/statsOn Sat, Feb 11, 2023 at 2:11 PM John Anderson <jb19790001(a)gmail.com> wrote:        External Email - Use Caution        export SUBJECTS_DIR=<path to your recons>mri_cnr $SUBJECTS_DIR/<subject name>/surf/ $SUBJECTS_DIR/ <subject name>/mri/norm.mgz > output_CNR.txt wm-anat-snr --s <subject name> check stats/wmsnr.e3.dat .... the output is snr for the whole white matter.if you need snr for every roi in aseg.stats or wmparc.stats, then you can add the flag --snr to the command mri_segstats as follows:mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /usr/local/freesurfer/6.0/ASegStatsLUT.txt --subject <subjectname> --snrdo the same for wmparc.stats:mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject <subjectname> --surf-wm-vol --ctab /usr/local/freesurfer/6.0/WMParcStatsLUT.txt --etiv --snrmake sure to change /usr/local/freesurfer/6.0/ASegStatsLUT.txt  in the previous command to the FS folder on your system The last two commands update aseg.stats and wmparc.stats. They both will get a new column for SNR values for every roi.On Fri, Feb 10, 2023 at 10:25 PM MANSON ERIC NAAB <enmanson(a)st.ug.edu.gh> wrote:        External Email - Use Caution        Thank you very much for your quick response. I still have a challenge locating the output file after running the suggested  command ( mri_cnr $SUBJECTS_DIR/bert/surf/ $SUBJECTS_DIR/bert/mri/norm.mgz) with my subject.Can you please provide me with the full command for calculating contrast-to-noise ratio and signal-to-noise ratio of white matter, gray matter and CSF since am a beginner Or a video link to calculate them.This is what i see after running the commandmri_cnr /Applications/freesurfer/7.1.1/SUBNEW/PA1//label/lh.cortex.labelmri_cnr -- compute the gray/white/csf contrast-to-noise ratio for volumes.usage: mri_cnr [options] <surf directory> <vol 1> <vol 2> ...usage example (assumes fs pipeline has finished for subject subj1): mri_cnr subj1/surf subj1/mri/orig.mgzAvailable options: -s <slope_fname> <dist in> <dist out> <step in> <step out>: compute slope based on given values, write it to slope and offset files labeled <slope_fname> (e.g., `lh.<slope_fname>.slope.mgz') -t : print only the total CNR to stdout (stderr still contains more information) -l <logfile>: log cnr to file <logfile>. Will contain 8 values in the following order: gray_white_cnr, gray_csf_cnr, white_mean, gray_mean, csf_mean, sqrt(white_var), sqrt(gray_var), sqrt(csf_var) label <lh> <rh>: read hemisphere labels from <lh> and <rh> -u, -?, -help : print usage information and quit -version : print software version information and quit.On Thu, Feb 9, 2023 at 3:46 PM John Anderson <jb19790001(a)gmail.com> wrote:        External Email - Use Caution        You might consider the command wm-anat-snr to compute SNROn Thu, Feb 9, 2023 at 10:38 AM Kumar, Avnish <Avnish.Kumar(a)mgh.harvard.edu> wrote:You could also use these:For CNR you can use the mri_cnr tool:mri_cnr [options] <surf directory> <vol 1> For example:mri_cnr $SUBJECTS_DIR/bert/surf/ $SUBJECTS_DIR/bert/mri/norm.mgzFor SNR, you'll have to calculate them as:Run the recon-all pipeline to process your MRI data.Use the mri_binarize tool to create a binary mask of the ROI in the image.Use the mri_segstats tool to calculate the mean and standard deviation of the intensity values within the ROI.Then your SNR = mean_intensity/std_of_intensity.Best,AvnishFrom: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Huang, Yujing <YHUANG43@mgh.harvard.edu>Sent: Tuesday, February 7, 2023 9:09 AMTo: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>Subject: Re: [Freesurfer] MRI image quality metrics Hi, The following is taken from MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1GW7LdX41sNV79_a8x11n-kRoiFNfVNYL0Ap-A…; as mentioned in this paper MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1hQvY1YI8eNsVP8riMVfQKAJE3-zVDvNtjJmOW… and Quantitative Assessment of MRI Data SNR: We calculated SNR for each subject using the “wm-anat-snr” FreeSurfer tool available in FreeSurfer v6.0. Voxels from the subject’s normalized T1 (norm.mgz) that containing white matter (WM) as defined by the subject’s aparc+aseg.mgz are used to calculate SNR with this tool. SNR = (mean WM)/(stdev WM) We ran the following command for each subject: wm-anat-snr –s CNR: We calculated CNR for each subject using the “mri_cnr” FreeSurfer tool available in FreeSurfer v6.0. This tool finds the average between two CNRs: the subject’s (1) WM and gray matter (GM) CNR and (2) gray matter and cerebrospinal fluid (CSF) CNR. The average CNR is then calculated and reported for each hemisphere. Finally, the CNR for both hemispheres are averaged to produce a full brain CNR. WM-GM CNR = (delta(WM,GM)^2)/(total variance) GM-CSF CNR = (delta(GM,CSF)^2)/(total variance) Hemisphere CNR = (WM-GM CNR + GM-CSF CNR) x 2 Full Brain CNR = (Left Hemisphere CNR + Right Hemisphere CNR) x 2“  Best, Yujing From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of MANSON ERIC NAABSent: Tuesday, February 7, 2023 5:26 AMTo: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>Subject: [Freesurfer] MRI image quality metrics         External Email - Use Caution        Dear FreeSurfer experts, Please, I need your assistance and guidance on calculating the contrast-to-noise ratio (CNR) and signal-to-noise-ratio (SNR) of White matter, Gray matter, and CSF of the brain after recon-all.. Thank you _______________________________________________Freesurfer mailing listFreesurfer(a)nmr.mgh.harvard.eduMailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1rKkzIfV_DzLNILRxnyY4Fje8QFhThqJSBSlIW… information in this e-mail is intended only for the person to whom it is addressed.  If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1dV8UN751GixkOKXvNMucx_B_FRuG_hTuJ9Eq1… has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1s8ApaR9CquWlOVImFdCFfUSQFySaIDBpzCAEG…; ._______________________________________________Freesurfer mailing listFreesurfer(a)nmr.mgh.harvard.eduMailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1rKkzIfV_DzLNILRxnyY4Fje8QFhThqJSBSlIW… information in this e-mail is intended only for the person to whom it is addressed.  If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1dV8UN751GixkOKXvNMucx_B_FRuG_hTuJ9Eq1… has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1s8ApaR9CquWlOVImFdCFfUSQFySaIDBpzCAEG…; .Please note that this e-mail is not secure (encrypted).  If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately.  Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail. _______________________________________________Freesurfer mailing listFreesurfer(a)nmr.mgh.harvard.eduMailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1rKkzIfV_DzLNILRxnyY4Fje8QFhThqJSBSlIW… information in this e-mail is intended only for the person to whom it is addressed.  If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1dV8UN751GixkOKXvNMucx_B_FRuG_hTuJ9Eq1… has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1s8ApaR9CquWlOVImFdCFfUSQFySaIDBpzCAEG…; ._______________________________________________Freesurfer mailing listFreesurfer(a)nmr.mgh.harvard.eduMailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1rKkzIfV_DzLNILRxnyY4Fje8QFhThqJSBSlIW… information in this e-mail is intended only for the person to whom it is addressed.  If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1dV8UN751GixkOKXvNMucx_B_FRuG_hTuJ9Eq1… has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1s8ApaR9CquWlOVImFdCFfUSQFySaIDBpzCAEG…; .Please note that this e-mail is not secure (encrypted).  If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately.  Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail. _______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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Pial Surface errors
by KennethSPrice 17 Feb '23

17 Feb '23

External Email - Use Caution Hello all, I am having trouble generating a pial surface on the right hemisphere. There seems to be some signal dropoff in 3 areas: insula, supplementary motor, and somatosensory cortex. I have added control points and run -autorecon2 -autorecon3 again. Any suggestions? Thanks, Ken

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error with synthsr
by Zeng, Victor (BIDMC - Keshavan - Psychiatry) 17 Feb '23

17 Feb '23

External Email - Use Caution Hi developers, Using freesurfer-linux-centos7_x86_64-dev-20230216-9bc2be6, I receive an error following mri_synthsr. It says : get_data() is deprecated in favor of get_fdata(), which has a more predictable return type. To obtain get_data() behavior going forward, use numpy.asanyarray(img.dataobj). * deprecated from version: 3.0 * Raises <class 'nibabel.deprecator.ExpiredDeprecationError'> as of version: 5.0 resuming program execution Since this seems to be a python problem, I am using python 3.7.7 and python 3.9.12, and neither seem to work. Thanks, Victor Zeng Beth Israel Deaconess Medical Center Keshavan Lab -- ---------------------------------------------------------------------- PLEASE NOTE: This message is intended for the use of the person to whom it is addressed. It may contain information that is privileged, confidential and exempt from disclosure under applicable law. If you are not the intended recipient, your use of this message for any purpose is strictly prohibited. If you have received this communication in error, please delete the message and notify the sender so that we may correct our records. See our web page at http://secure-web.cisco.com/1dK_bHHkDS4VkptJxydJWEsTpLGrrOWpg6cDRwbGoBle5Ul… for a full directory of Beth Israel Lahey Health sites, staff, services and career opportunities.

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Password for archive FS_7_2_0_ubuntu_18_04_06.ova.7z
by Yoann Thiébaut-George 17 Feb '23

17 Feb '23

External Email - Use Caution Hello, I'd like to request the password for FS_7_2_0_ubuntu_18_04_06.ova.7z in order to install the virtual image and run Freesurfer in a Virtualbox VM. Thanks a lot !

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Re: [Freesurfer] Password to FS_7_2_0_Ubuntu_18_04_06.ova.7z file
by Richard Nkrumah 17 Feb '23

17 Feb '23

External Email - Use Caution Dear Freesurfer Admin, Can I kindly get the password to extract your FS_7_2_0_Ubuntu_18_04_06.ova.7z file? I want to try Freesurfer on a Windows device using VirtualBox. Thank you. Best Richard

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Re: [Freesurfer] Request for passcode
by Chris Allis 16 Feb '23

16 Feb '23

External Email - Use Caution Hello , Requesting the passcode to uncompress this archive. FS_7_2_0_Ubuntu_18_04_06.ova.7z Thank you very much!

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Along- tract multiple comparison result visualisation and summary interpretation
by miracle ozzoude 16 Feb '23

16 Feb '23

External Email - Use Caution Hello, I have questions regarding the along-tract stats using mri_glmfit and mri_glmfit-sim with permutation for version 7.2. 1) I ran it and I found a significant result (see attached summary file) where I expected/found a negative association between FA and clinical score. how do I know the entire length of the tract and how much was affected based on the summary file; should I be interpreting the results from the summary file differently? 2) Also when performing clusterwise correction for multiple comparison for along-tract analyses, should the bonferroni flag (--2spaces) be included? This is because it wasn't mentioned/included in the tracula statistics tutorial nor the publication "Using diffusion MRI data acquired with ultra-high gradient strength to improve tractography in routine-quality data ". 3) Lastly, is it appropriate to embed the perm.th13.neg.sig.cluster.mgh from mri_glmfit-sim in dmri_trk2trk? Many thanks, Paul

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recon-all does not produce ?h.white files
by Faraz Yazdanibanafshedaragh 15 Feb '23

15 Feb '23

External Email - Use Caution Hello, When I use the command recon-all -autorecon2-wm -subjid ${tmp_subj} -noaseg -xopts-use I only get ?h.white.K and ?h.white.H files, but not the ?h.white file that I need for mri_vol2surf script (so it exits with error). What am I doing wrong? Thank you

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Re: [Freesurfer] segmenThalamicNuclei.sh exited with ERRORS
by fsbuild 15 Feb '23

15 Feb '23

External Email - Use Caution You can try and piecemeal install missing libraries as Bennet suggested, however that is no guarantee everything you need will be installed.   Installing the .deb package (as I originally suggested) should install that and anything else needed.  And if an administrator has permission to run the command Bennet suggested, then you will have permission to run the installer you download from https://secure-web.cisco.com/1dTe66faitgItOrZ5LFcDBU07rjhW-8GQsdy…  Just ask your administrator to look at that page and install the correct package from it. - R. On Feb 15, 2023, at 09:17, behçet ayyıldız <behcetayyildizz(a)gmail.com> wrote:        External Email - Use Caution        Dear Bennet, Thank you very much for your help and suggestion. I tried it but it didn't work by indicating the following error "drodriguez (the ID that I use to login the computers) is not in the sudoers file. This incident will be reported. I think I should consult with my system administrator.Thanks for your suggestion.Bennet Fauber <bennet(a)umich.edu>, 15 Şub 2023 Çar, 14:07 tarihinde şunu yazdı:        External Email - Use Caution        Behçet,This message is the key:> error while loading shared libraries: libncurses...so.5: cannot open shared object file: No such file or directoryFreeSurfer is looking for a supporting library that it expects youroperating system installation to have but that is not there.If you can use `sudo` on your system, then you should be able toinstall this library with$ sudo apt-get install libncurses5If not, then ask your system administrator to install the libncurses5package.  If that is truly the only problem, installing the missingncurses library should fix it.On Wed, Feb 15, 2023 at 7:59 AM behçet ayyıldız<behcetayyildizz(a)gmail.com> wrote:>>         External Email - Use Caution>> Hello,> Thank you for your valuable reply. I would ask something before checking it. I forgot to say something, even after the computers change  "recon-all" is running, just like it runs before the change, however not the segmentThalamicNuclei.sh command. So yeah, I would also say that the problem is only in the segmentation module of Freesurfer for now.> Thanks in advance,>> fsbuild <fsbuild(a)contbay.com>, 15 Şub 2023 Çar, 13:07 tarihinde şunu yazdı:>>>>>> Hello Behçet,>>>> Are you saying the version of the Ubuntu operating system changed and now when you run the same command you get this error about the missing library ?>>>> If so, I would check with your system administrators to see if they have installed the freesurfer 7.1..1 .deb freesurfer package from MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1At8QKM5oUsIZmRsMRNPvhsQysuzVxU0In_cXK… matches the version of Ubuntu you are now running..   Running the installer package should try to fix that missing library dependency.>>>> - R.>>>> On Feb 15, 2023, at 05:36, behçet ayyıldız <behcetayyildizz(a)gmail.com> wrote:>>>>         External Email - Use Caution>>>>>> Dear All,>> I was using Linux Ubuntu to perform my analysis. However, they were changed with Linux ..... a couple of days ago. And while the segmentThalamicNuclei.sh command was running before the change, after the change it didn't run and I got the following message.>>>>>> drodriguez@causal:/data_august/Daniela/Behcet/Freesurfer_pulvinar_OCD$ segmentThalamicNuclei.sh con_HaJa93>> Setting ITK threads to 1>> #-------------------------------------------->> #@# Thalamic Nuclei processing Wed 15 Feb 2023 11:09:10 AM CET>> ------------------------------------------>> Setting up environment variables>> --->> LD_LIBRARY_PATH is ..:/sw/freesurfer/7.1.1//MCRv84//runtime/glnxa64:/sw/freesurfer/7.1..1//MCRv84//bin/glnxa64:/sw/freesurfer/7.1.1//MCRv84//sys/os/glnxa64:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/server:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/client:/sw/freesurfer/7..1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64:>> /sw/freesurfer/7.1.1//bin/SegmentThalamicNuclei: error while loading shared libraries: libncurses..so.5: cannot open shared object file: No such file or directory>> 127>> Linux causal.brain.mri.tu-muenchen.de 5..10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux>>>> Do you guys have any idea how to fix it ?>>>> Thanks in advance.>>>> -->>>> Behçet Ayyıldız..>>>> _______________________________________________>> Freesurfer mailing list>> Freesurfer(a)nmr.mgh.harvard.edu>> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1C2qT0kjSdOsO4Urhs8YV1g41i7E88v5A13FUD… -->> Behçet Ayyıldız..>> _______________________________________________> Freesurfer mailing list> Freesurfer@nmr.mgh.harvard.edu> https://secure-web.cisco.com/1C2qT0kjSdOsO4Urhs8YV1g41i7E88v5A13FUDYy7LmlSF2EiRbuT9gvgVLFnERelVG7_YRTnwqm0aXquB-vbmJ0jQAxSOTe8uQyFN_P8ZL1FwAFmhQ8FfLjY3Z5HTT-HZfbruZjUbDfH5fkjSchgybsVsgQwgfAxATRkNUwCqRksjrUUh8wBE4CJj8DQDm45HtuhuXqDun2aXI-UcJwyYkVHt4PVNsRQHNDiVhBOTSN6bvp28B7EiOm3mheAspAgjxXwS71tqnTYhrR88RP87ovsHucfO-sn26KZ23WDaP_GEnfP8f-LDa-HmtzJQlieoYJhxj9F7fbm26glFDKxPA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> The information in this e-mail is intended only for the person to whom it is addressed.  If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://secure-web.cisco.com/1ud1ykrOdc9YoV_4X5XaFkvrONTcVWrgb6Uukm… .> Please note that this e-mail is not secure (encrypted).  If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately.  Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail._______________________________________________Freesurfer mailing listFreesurfer(a)nmr.mgh.harvard.eduMailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttps://mail.nmr.mgh..harvard.edu/mailman/listinfo/freesurferThe information in this e-mail is intended only for the person to whom it is addressed.  If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttps://http://secure-web.cisco.com/1f2TRP1uqxlaYesltAMsyMHo_l-V5RYiDmioq… has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1ji_U3JB1P4m2GTdB7gxZzx3l0y-DQBvBcxWZa…; .-- Behçet Ayyıldız.._______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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neurological view on command line
by Aaron Tanenbaum 15 Feb '23

15 Feb '23

External Email - Use Caution Is there a flag on the command line to turn on neurological view or do I have to turn it on in the GUI.

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