Dear all,
I've looked a little bit further into why LGI fails for fsaverage. I previously tried simply running recon-all -s fsaverage-localGI but the script exited with errors after a good while. More importantly for me, the lh.pial-outer-smoothed surface, which I am after, did not look right.
It seems that the first step, mris_fill, produces a volume that does not look very much like a brain anymore (cf. attached screenshot). Any idea why that would happen?
Thanks,
Pierre -- Pierre Mégevand, MD, PhD PLOS Neuro Community http://neuro.plos.org editor - Follow us on Twitter http://twitter.com/PLOSNeuro Postdoc @ Feinstein Institute for Medical Research (NY, USA) Follow me on Twitter http://twitter.com/pierre_vanmedge - Read my blog here http://neuroscimed.wordpress.com
