9 Mar
2017
9 Mar
'17
7:57 p.m.
Dear Freesurfer Experts,
I want to customize the directory so I can run the following command
mris_preproc --fsgd gender_age.fsgd --cache-in thickness.fwhm10.fsaverage --target fsaverage --hemi lh --out lh.gender_age.thickness.10.mgh
However, after running this command it keeps checking in the wrong directory for the files. How do I change the directory, do I change it in the FSGD file I made or somewhere else? I ran the recon-all qcache, but I need to run this on the previously cached data. I would greatly appreciate it if you can assist me with this problem.
Best Regards,
Gaurang Shyam LImachia