12 Oct
2022
12 Oct
'22
3:16 a.m.
External Email - Use Caution
Hello team,
As freesurfer takes lot of time for processing one subject, I was searching on how to run recon-all for multiple subjects in parallel and I found the following in Andy's brain book doc
https://secure-web.cisco.com/1MEMXaE4I_nNiI-Rew0Vd8aEQB5KqBzrJ54sB6YQjjf_p8m...
and ran
$ ls *.nii | parallel --jobs 8 recon-all -s {.} -i {} -all -qcache
and I get the error "/usr/bin/bash: /home/***/***/freesurfer/bin/recon-all: /bin/tcsh: bad interpreter: No such file or directory "
I believe that this is not the right command for linux, ubuntu 20 OS but I am not sure.
Could anyone help me with this?
Thank you
--
Best Regards
Padma Priya
*AI Developer *
*PhenoMx, Inc.*
*priya@phenomx.ai priya@phenomx.ai | (+82)10-5405-2685*