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I am new to FS, and I am having the same error that Krishna had last year. I don't see a link to the 'lh.white.k' file in my surf folder. Has anyone resolved this problem? I can side step the error with '-qcache -measure thickness' to only process thickness files, but I'd like to be able to process all the files in my subject folders. Thanks, Doug
Command line input: recon-all -s <subject> -qcache
Command line output: #@# Qdec Cache preproc lh white.K fsaverage
/surf
mris_preproc --s <subject> --hemi lh --meas white.K --target fsaverage --out lh.white.K.fsaverage.mgh
nsubjects = 1
ERROR: cannot find
/lh.white.K
recon-all -s <subject> exited with ERRORS
Re: [Freesurfer] -qcache errorhttps://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=subject:%22Re%5C%3A+%5C%5BFreesurfer%5C%5D+%5C-qcache+error%22&o=newest
Douglas Grevehttps://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=from:%22Douglas+Greve%22 Fri, 09 Mar 2018 08:18:34 -0800https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=date:20180309
It was deleted but then it was created as a link. Does the link exist?
________________________________
On 3/7/18 1:33 PM, Krishna Patel wrote:
Hi - I would like to do group analysis on freesurfer data that is processed with verson 6. However when I try to run
recon-all -s subjid -qcache
I get following error after it runs for some time and generates some of the files.
ERROR: cannot find surf/lh.white.K
When I look at the log file - I see that this file was deleted. See following.
total integrated curvature = -1.022*4pi (-12.846) --> 2 handles ICI = 169.4, FI = 1785.3, variation=28139.036 writing Gaussian curvature to ./lh.white.preaparc.K...done. writing mean curvature to ./lh.white.preaparc.H...done. rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H rm -f lh.white.K ln -s lh.white.preaparc.K lh.white.K
Does anyone have any idea of what might be the issue here?
Thanks, -Krishna
________________________________ From: Peters, Douglas G Sent: Thursday, January 10, 2019 4:55:31 PM To: freesurfer@nmr.mgh.harvard.edu Subject: -qcache error
I am new to FS, and I am having the same error that Krishna had last year. I don't see a link to the 'lh.white.k' file in my surf folder. Has anyone resolved this problem? I can side step the error with '-qcache -measure thickness' to only process thickness files, but I'd like to be able to process all the files in my subject folders. Thanks, Doug
Command line input: recon-all -s <subject> -qcache
Command line output: #@# Qdec Cache preproc lh white.K fsaverage
/surf
mris_preproc --s <subject> --hemi lh --meas white.K --target fsaverage --out lh.white.K.fsaverage.mgh
nsubjects = 1
ERROR: cannot find
/lh.white.K
recon-all -s <subject> exited with ERRORS
Re: [Freesurfer] -qcache errorhttps://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=subject:%22Re%5C%3A+%5C%5BFreesurfer%5C%5D+%5C-qcache+error%22&o=newest
Douglas Grevehttps://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=from:%22Douglas+Greve%22 Fri, 09 Mar 2018 08:18:34 -0800https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=date:20180309
It was deleted but then it was created as a link. Does the link exist?
________________________________
________________________________
On 3/7/18 1:33 PM, Krishna Patel wrote:
Hi - I would like to do group analysis on freesurfer data that is processed with verson 6. However when I try to run
recon-all -s subjid -qcache
I get following error after it runs for some time and generates some of the files.
ERROR: cannot find surf/lh.white.K
When I look at the log file - I see that this file was deleted. See following.
total integrated curvature = -1.022*4pi (-12.846) --> 2 handles ICI = 169.4, FI = 1785.3, variation=28139.036 writing Gaussian curvature to ./lh.white.preaparc.K...done. writing mean curvature to ./lh.white.preaparc.H...done. rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H rm -f lh.white.K ln -s lh.white.preaparc.K lh.white.K
Does anyone have any idea of what might be the issue here?
Thanks, -Krishna