Dear Experts, I checked the topology corrected surfaces in recon-all pipeline however i found it didn't do well as still there are many topology defects in the pial surfaces. I know how to correct them manually in freeview but are there any commands to recorrect these topological defects with for example variables ? ( shall i use mris_fix_topology or? ) Thank you.
On Sat, Sep 23, 2017 at 7:16 PM Fereshte fereshte.ramezani@gmail.com wrote:
Thank you. Cheers
On Sat, Sep 23, 2017 at 7:13 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Segonne, F., Pacheco, J., Fischl, B., 2007. Geometrically accurate topology-correction of cortical surfaces using nonseparating loops. IEEE Trans Med Imaging 26, 518-529.
Fischl, B., Liu, A., Dale, A.M., 2001. Automated manifold surgery: constructing geometrically accurate and topologically correct models of the human cerebral cortex. IEEE Trans Med Imaging 20, 70-80.
Florent Ségonne,Eric GrimsonBruce Fischl, 2003. Topological Correction of Subcortical Segmentation MICCAI 2003: Medical Image Computing and Computer-Assisted Intervention - MICCAI 2003 pp 695-702
On Sat, 23 Sep 2017, Fereshte wrote:
Where can i find the details? Thank you.
On Sat, Sep 23, 2017 at 6:59 PM Bruce Fischl <
fischl@nmr.mgh.harvard.edu> wrote:
Yes, that is part of the recon-all pipeline (actually we have 3separate
topology correction procedures, two for the surface and one forthe
volume) cheers Bruce On Sat, 23 Sep 2017, Fereshte wrote: > Dear FreeSurfer Developers Is it possible to correcttopological defects automatically
in > FreeSurfer? ( not correcting manually with Recon Edit) > Thank you. > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person towhom it is
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