Dear Freesurfers,
I usually get very satisfying results but in my last analysis I noticed some errors in a few subjects' pial surface (see attached example image). I really don't get how it failed in that way. What I know I can surely do is to manually modify the WM and run again the autorecon command.
Could someone kindly advice me on how to avoid/solve the problem in a less time-consuming way? Thank you.
Regards,
Valeria Elisa Contarino, MEng Neuroradiology Department IRCCS Foundation Neurological Institute "C.Besta" Via Celoria 11, 20133 Milano, Italy ph: +39 02 23942472