Hi everybody,
I am new user of Freesurfer,I simply take five procedures to process my data ,after I read the wiki on the website. The five procedures including:
1. mri_convert one-dicom-file-from-series blobby.nii.gz
2.recon-all -i blobby.nii.gz -subjid blobby –all
3.recon-all -s <subjid> -qcache
4.make_average_subject.
5.qdec
Now, my questions are:
1.In our e-mail ,you often talk about recon-all, why did I never across question about it ?
2. I tried to run the qdec-tool, but experienced some problems . I got different thickness in one area. In detail: 1. When I open theqdec.table.dat ,the thickness is different from the thickness got from the display in Find Clusters and Goto Max, I really do not know why? 2. Did I get the same results from two differentqdec.table.dat , one qdec.table.dat has 34 Continuous Variables but the other had only one Continuous Variable ?
3.Why did the display from qdec smaller than the examples in the wiki on the website?
Such as the pictures follow.
I guess part of my problem is that I'm having trouble understanding exactly how to use the freesurfer. Can you try to give me a sort of layman's explanation?
Thanks for your answer!
wang
