Hi Ryan, this issue should be fixed in the freesurfer development version, but as a temporary fix to get things working in v6, I would suggest disabling SIP and rerunning: http://osxdaily.com/2015/10/05/disable-rootless-system-integrity-protection-... best Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Ryan Flores ryan10@stanford.edu Reply-To: FS Help freesurfer@nmr.mgh.harvard.edu Date: Monday, June 18, 2018 at 1:07 PM To: FS Help freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Recon-all exited with errors
External Email - Use Caution Dear FS developers,
I tried running recon-all using the -parallel flag over the weekend, but to my surprise they all exited with errors. I’m hoping the problem is something subtle, but I’m having trouble understanding the error log (please see attached). Can someone point out the issue? Thank you for your help.
Best,
Ryan
-- Ryan Flores Clinical Research Coordinator