Hi Brian,
coming back to your talairach.xfm question. Actually it is not really used for anything except the eTIV computation (estimated total intracranial volume). Therefore it is not really necessary to correct this unless you need that value. The talairach.lta however is used for the segmentation and copied from the base to each timepoint (concatenation of the transforms), therefore it should be as accurate as possible in the base run.
We are currently looking at your other bug. The base template is not created correctly, not sure why.
Best, Martin
On Tue, 2009-10-06 at 14:38 -0400, Weisinger, Brian (NIH/OD) [E] wrote:
Hi Martin,
I just wanted to get your opinion about these images...It looks like I need to stretch them some so that the green part is in the white brain area. Would you agree?
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