yes.
The images have lower SNR but we ran other subjects with similar acquisition parameters and we didn't have problems.
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu Sent: Thursday, December 6, 2018 3:46:27 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Longitudinal Stream - LONG step
Does the orig.mgz file look ok?
On 11/30/2018 01:14 PM, Figueiro Longo, Maria Gabriela wrote:
Hello FreeSurfer Developers,
I'm attempting to run the longitudinal stream, but in the [LONG] step of one time-point of on of my subjects, I have the following error:
MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 11 Starting OpenSpline(): npoints = 11 MRInormFindControlPoints: could not find enough control points building Voronoi diagram... performing soap bubble smoothing, sigma = 8...
Iterating 2 times
3d normalization pass 1 of 2 No such file or directory MRInormFindControlPoints failed No such file or directory
The segmentation of the this time-point for this subject ([CROSS] step) looks good and I couldn't find any error. I didn't find any similar error in the email list. Does anyone have any thoughts on how to trouble-shoot this one? I attached the recon-all.log.
FS version: freesurfer-linux-centos7_x86_64-dev-20181130-24625d8
Thanks, Gabriela
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