Hi, I am running Ubuntu 8.04 and freesurfer V4.3.0. It worked well once upon a time. However, I get this error about the mghRead as follows.
*~$ recon-all -autorecon1 -s liwentao_1 -i /mnt/data2/data/trauma/** liwentao_1.mgz* Subject Stamp: freesurfer-Linux-centos4-stable-pub-v4.3.0 Current Stamp: freesurfer-Linux-centos4-stable-pub-v4.3.0 INFO: SUBJECTS_DIR is /usr/local/freesurfer/subjects Actual FREESURFER_HOME /usr/local/freesurfer Linux nica 2.6.24-24-generic #1 SMP Tue Jul 7 19:46:39 UTC 2009 i686 GNU/Linux /usr/local/freesurfer/subjects/liwentao_1
mri_convert /mnt/data2/data/trauma/liwentao_1.mgz /usr/local/freesurfer/subjects/liwentao_1/mri/orig/001.mgz
mri_convert /mnt/data2/data/trauma/liwentao_1.mgz /usr/local/freesurfer/subjects/liwentao_1/mri/orig/001.mgz mghRead: encountered error executing: 'zcat /mnt/data2/data/trauma/liwentao_1.mgz',frame -1,errno=38 $Id: mri_convert.c,v 1.146.2.4 2009/01/30 02:30:42 nicks Exp $ reading from /mnt/data2/data/trauma/liwentao_1.mgz... Linux nica 2.6.24-24-generic #1 SMP Tue Jul 7 19:46:39 UTC 2009 i686 GNU/Linux
recon-all exited with ERRORS at Fri Jul 31 09:20:08 CST 2009
I try to run it step by step: *~$ mri_convert /mnt/data2/data/trauma/**liwentao_1.mgz /usr/local/freesurfer/**subjects/liwentao_1/mri/orig/**001.mgz* mri_convert /mnt/data2/data/trauma/liwentao_1.mgz /usr/local/freesurfer/subjects/liwentao_1/mri/orig/001.mgz $Id: mri_convert.c,v 1.146.2.4 2009/01/30 02:30:42 nicks Exp $ reading from /mnt/data2/data/trauma/liwentao_1.mgz... mghRead: encountered error executing: 'zcat /mnt/data2/data/trauma/liwentao_1.mgz',frame -1,errno=38
There is sufficient disk space for freesurfer running. I searched the mail-archive and noticed the potential solutions. But it doesn't work.
Any suggestion is appreciated!