Yes, they won't be preserved unless they are 1
On Jul 25, 2014, at 9:33 PM, Xiaomin Yue yuexm@hotmail.com wrote:
It is 5.3. The voxels erased was set as 0. Is that the problem? If so, I can try to replace 0 with 1.
Xiaomin From: Bruce Fischl Sent: 7/25/2014 9:22 PM To: Freesurfer support list Subject: Re: [Freesurfer] wm.mgz
What version? Check the voxels you erased and see if they were set to 1 instead of 0
On Jul 25, 2014, at 8:39 PM, Xiaomin Yue yuexm@hotmail.com wrote:
Hi Bruce,
Thanks for your response. the editing was done in freeview. I saved the edited version as wm.edited.mgz, then copy the wm.edited.mgz to wm.mgz. is that the problem? Is it necessary to save the edited wm.mgz as wm.mgz in freeview? I hope it is clear what I did.
Thanks, Xiaomin
From: Bruce Fischl Sent: Friday, July 25, 2014 8:36 PM To: Freesurfer support list
Hi Xiaomin
how did you edit wm.mgz? If within tkmedit (or "recon editing" in freeview) and you reran recon-all it should have preserved your edits, even though it regenerated the file. Have you checked?
Bruce
On Fri, 25 Jul 2014, Xiaomin Yue wrote:
Hi,
My edited wm.mgz was saved as wm.edited.mgz, then it copied to wm.mgz. I re-run the anlysis using recon-all -s cologna -autorecon2-wm. From some reason, the analysis regenerated wm.mgz from brain.mgz, which of course replaced my edited wm.mgz. Did I do some wrong here?
Thanks, Xiaomin
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