Hello Bruce, Yes, the skull is still attached. Should I remove the skull for all the slices and re-run it again? Best, Paul
On Fri, May 19, 2017 at 10:28 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Paul
you need to look at the rh.orig.nofix and rh.inflated.nofix. Typically something big is wrong like skull attached to brain or something
cheers Bruce
On Fri, 19 May 2017, miracle ozzoude wrote:
Hello Freesurfer expert, While running recon-all on one of my subjects, the
pipeline got stuck during the "fix topology rh" stage for almost 12hrs. How do I diagnosis the problem and fix it? I have attached the recon-all.log file. Thank you Best, Paul
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