Re: [Freesurfer] MacOS Sierra 10.12.5 dyld lazy symbol binding error

Hi Andrew,

That fixed it! Thank you!

Best,

Kelly

On Tue, Nov 28, 2017 at 11:17 AM, Hoopes, Andrew AHOOPES@mgh.harvard.edu wrote:

Hi Kelly,

This might have to do with SIP being enabled, which blocks libraries stored in /usr. I would suggest disabling SIP and rerunning to see if that fixes things: http://osxdaily.com/2015/10/05/disable-rootless-system- integrity-protection-mac-os-x/

best, Andrew

On Nov 27, 2017, at 6:33 PM, Kelly Martin kcm81@georgetown.edu wrote:

Hi all,

I have Freesurfer version freesurfer-i386-apple-darwin11.4.2-stable6-20170119 installed on my MacOS Sierra 10.12.5 environment, and am experiencing similar library issues to what others have reported. I have tried previously offered suggestions to update and test MacPorts, as well as $ sudo -E fs_update. I am trying to run a Connectome Workbench command, but the errors I am receiving involve incompatibilities with the Freesurfer libraries. I was however able to run recon-all without a problem. Does anyone have a recommendation on how to proceed?

This is the error:

dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address

Referenced from: /Users/username/Applications/ freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib

Expected in: /usr/lib/libSystem.B.dylib

Thank you,

Kelly

-- Kelly Martin Graduate Student Interdisciplinary Program in Neuroscience Georgetown University _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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