I’m assuming transforms/talairach.xfm is in there? Also: what was the exact command you ran? Cheers, /E
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Wei Shao wshao@research.baycrest.org Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Friday, April 23, 2021 at 11:05 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Hippocampus segmentHA_T1.sh
External Email - Use Caution Hello, Dear FreeSurfer expert
I tried to use segmentHA_T1.sh for the hippocampus subfields, However, here is the log cannot find the wmparc.mgz or norm.mgz or talairach.xfm for the subject. Has the subject been procesed with recon-all?
But the wmparc.mgz and norm.mgz are there
[cid:image001.png@01D73834.9E551570]
Could you tell me how to fix this? Thanks!
Best, Wei
