Hello Freesurfer,
I am trying to learn freesurfer and ran into the following issues below running the recon -all command.
FREESURFER_HOME: /Applications/freesurfer
Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0
Kernel info: Darwin 14.5.0 x86_64
1)
joya
2)
Jasmins-MacBook-Pro:subjects jasminalves$ recon-all -i T1_original_joya.nii -subject joya -all &
3)
[1] 12300
Jasmins-MacBook-Pro:subjects jasminalves$ mkdir: /Applications/freesurfer/subjects/joya: Permission denied
mkdir: /Applications/freesurfer/subjects/joya/scripts: Permission denied
mkdir: /Applications/freesurfer/subjects/joya/scripts: Permission denied
cp: /Applications/freesurfer/subjects/joya/scripts/build-stamp.txt: No such file or directory
cat: /Applications/freesurfer/subjects/joya/scripts/build-stamp.txt: No such file or directory
INFO: FreeSurfer build stamps do not match
Subject Stamp:
Current Stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0
INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects
Actual FREESURFER_HOME /Applications/freesurfer
/Applications/freesurfer/subjects/joya: No such file or directory.
[1]+ Exit 1 recon-all -i T1_original_joya.nii -subject joya -a Thank you, Jasmin
Jasmin Alves Predoctoral Student Medical Biology Graduate Program University of Southern California jalves@usc.edu