Hello Doug and Bruce,
I have encountered the same issue with 2 other subjects. I checked the ?h.orig.nofix and find nothing wrong (like attached skull). How do I proceed with solving these problems? I have attached each subject's recon.log file.
Thanks, Paul
On Tue, May 23, 2017 at 11:40 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu
wrote:
And is this version 6 or 5.3?
On 05/23/2017 08:21 AM, miracle ozzoude wrote:
Hello Bruce, So far, I have only encountered this error in 2/147 of my subjects. Best, Paul
On Mon, May 22, 2017 at 11:00 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
Hi Paul, are you using version 6? Is this happening on more than one subject or is this subject an outlier? On 05/19/2017 10:28 AM, Bruce Fischl wrote: > Hi Paul > > you need to look at the rh.orig.nofix and rh.inflated.nofix. Typically > something big is wrong like skull attached to brain or something > > cheers > Bruce > > > On Fri, 19 May 2017, miracle ozzoude wrote: > >> Hello Freesurfer expert, While running recon-all on one of my >> subjects, the >> pipeline got stuck during the "fix topology rh" stage for almost >> 12hrs. How >> do I diagnosis the problem and fix it? I have attached the recon-all.log >> file. Thank you >> Best, >> Paul >> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 <tel:617-724-2358> Fax: 617-726-7422 <tel:617-726-7422> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 <https://gate.nmr.mgh.harvard.edu/filedrop2> www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
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