Try adding --reg $SUBJECTS_DIR/fsaverage/mri.2mm/reg.2mm.dat
On 11/23/2023 2:32 AM, wangzhiwei3233 wrote:
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Dear Freesurfer Experts, I did group-level analysis in MNI305 space. Then I output the summay via command 'mri_volcluster' as follows: /*mri_volcluster --in* ./sig.nii.gz *--thmin* ${thvoxel} *--sign* ${sigsignTemp} *--cwpvalthresh* 0.05 *--minsize* 273 *--fwhm 6* *--no-adjust --sum* ${nameout}.cluster.summary*--out* ${nameout}.cluster.nii.gz *--ocn* ${nameout}.ocn.nii.gz *--labelbase* $Dir_Subj_fMRI/$out_dir_group/$analysis/$contrast/label_${nameout}/label *--mask* /mnt/hgfs/G/work/MetaCog/Human/subjects/fsaverage/mri.2mm/subcort.mask.mgz/ / / the output is as follows. there are no ROI names in the table. Is it because I missed the option '--reg' in the command line? Which register file shoul I use if I should add it? I can't find the 'register.dat' file in fsaverage folder.
Very appricated if you can help me.
Best, zhiwei
# Reporting Coordinates in Voxel Indices # Cluster Size(n) Size(mm^3) VoxX VoxY VoxZ Max GRFCWP 1 5270 42160.0 33.00 35.00 60.00 6.04524 0.0000001 2 1995 15960.0 15.00 65.00 24.00 4.32869 0.0008543 3 1429 11432.0 51.00 64.00 17.00 3.72032 0.0036314 4 690 5520.0 55.00 56.00 49.00 -3.22358 0.0488862
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