External Email - Use Caution
Dear Douglas,
thank you for your response. Sorry if I've been misunderstood. I want to have the following parcellation of lobes: Frontal • Superior Frontal • Rostral and Caudal Middle Frontal • Pars Opercularis, Pars Triangularis, and Pars Orbitalis • Lateral and Medial Orbitofrontal • Precentral • Paracentral • Frontal Pole • Rostral Anterior Cingulate • Caudal Anterior Cingulate Parietal • Superior Parietal • Inferior Parietal • Supramarginal • Postcentral • Precuneus • Posterior Cingulate • Isthmus Temporal • Superior, Middle, and Inferior Temporal • Banks of the Superior Temporal Sulcus • Fusiform • Transverse Temporal • Entorhinal • Temporal Pole • Parahippocampal Occipital • Lateral Occipital • Lingual • Cuneus • Pericalcarine
After the mri_annotation2label --subject PRI002 --hemi lh --lobesStrict lh.lobesStrict.annot how can I merge the labels originally assigned to the Cingulate (Rostral Anterior (Frontal), Caudal Anterior (Frontal), Posterior (Parietal) e Isthmus (Parietal)), at the lobes?
Thank you very much in advance, Fernanda H. P. de Moraes
On Mon, Aug 6, 2018 at 1:10 PM Douglas N. Greve dgreve@mgh.harvard.edu wrote:
Sorry, I'm not sure I understand. You want the lobes annotation but you want to merge the cingulate with the frontal? After you run the 1st mri_annotation2label, run it again with the lobes as the input annotation and specifying --outdir to break up the annotation into labels. Then run your mergelabels command to merge cingulate with frontal. Then run mris_label2annot to create a new annotation with the merged labels.
On 08/03/2018 05:40 PM, Fernanda Hansen P. de Moraes wrote:
External Email - Use CautionDear FreeSurfer experts,
I want to get with mris_anatomical_stats the stats from the four lobes, Frontal, Parietal, Temporal and Occipital as suggest here (https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation), but without the cingulate.
I am trying to use the mri_mergelabels to merge that labels: Rostral Anterior (Frontal) Caudal Anterior (Frontal) Posterior (Parietal) Isthmus (Parietal) in their lobes, but I am facing some difficulties. I am sorry if this is a basic question, but I couldn't find an example that worked for me in the mail archive.
I am following these steps:
mri_annotation2label --subject PRI002 --hemi lh --lobesStrict lh.lobesStrict.annot mri_mergelabels -i lh.frontal -i lh.rostralanteriorcingulate -i lh.caudalanteriorcingulate -o lh.frontal
Is there an easier way to do it?
Thank you very much in advance, Fernanda Hansen P. de Moraes
-- Fernanda Hansen P. de Moraes
Física Médica | Rede D'Or São Luiz Doutoranda em Ciências Médicas | Instituto D'Or de Pesquisa e Ensino
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.