Hi, I attached the file, thank you!
Best Francesca
2014-11-06 18:58 GMT+02:00 Douglas N Greve greve@nmr.mgh.harvard.edu:
Can you send me
/usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat
On 11/06/2014 09:53 AM, Francesca Strappini wrote:
Dear all,
I'm trying to run a retinotopy analysis in several subjects but it crashed with an error in one subject. I ran this command line:
selxavg3-sess -a rtopy.HS.rh -s SUBJ09
and this is the last part of the output with the error message. Any help would be much appreciated.
Best Francesca
< M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013b (8.2.0.701) 64-bit (glnxa64) August 13, 2013 ---------------------------------------------------- Your MATLAB license will expire in 56 days. Please contact your system administrator or MathWorks to renew this license. ----------------------------------------------------To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com http://www.mathworks.com.
>> >> >> >> >>
sxa3pwd =
/usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed
sxa3cmd =
/usr/local/freesurfer/fsfast/bin/selxavg3-sess -a rtopy.HS.rh -s SUBJ09
/usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>
#@# SUBJ09 ############################### /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09
$Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $ /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m /usr/local/freesurfer/matlab/MRIread.m
outtop = /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed Extension format = nii.gz nruns = 4 autostimdur =
outanadir =
/usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh
Found 110059/126364 (87.1) voxels in mask Creating Design Matrix ... creation time = 0.005 sec DoMCFit = 1 ntptot = 960, nX = 36, DOF = 924 Saving X matrix to
/usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat
Error using svd Input to SVD must not contain NaN or Inf.
Error in cond (line 36) s = svd(A);
Error in fast_selxavg3 (line 279) XCond = cond(XtX);
-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strappini@weizmann.ac.il mailto:francesca.strappini@weizmann.ac.il
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