Dear all,
I'm trying to run a retinotopy analysis in several subjects but it crashed with an error in one subject. I ran this command line:
selxavg3-sess -a rtopy.HS.rh -s SUBJ09
and this is the last part of the output with the error message. Any help would be much appreciated.
Best Francesca
< M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013b (8.2.0.701) 64-bit (glnxa64) August 13, 2013
---------------------------------------------------- Your MATLAB license will expire in 56 days. Please contact your system administrator or MathWorks to renew this license. ----------------------------------------------------
To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com.
>> >> >> >>
sxa3pwd =
/usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed
sxa3cmd =
/usr/local/freesurfer/fsfast/bin/selxavg3-sess -a rtopy.HS.rh -s SUBJ09
/usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>
#@# SUBJ09 ############################### /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09 ------------------------- $Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $ /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m /usr/local/freesurfer/matlab/MRIread.m ------------------------- outtop = /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed Extension format = nii.gz nruns = 4 autostimdur =
outanadir = /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh Found 110059/126364 (87.1) voxels in mask Creating Design Matrix ... creation time = 0.005 sec DoMCFit = 1 ntptot = 960, nX = 36, DOF = 924 Saving X matrix to /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat Error using svd Input to SVD must not contain NaN or Inf.
Error in cond (line 36) s = svd(A);
Error in fast_selxavg3 (line 279) XCond = cond(XtX);
Can you send me /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat
On 11/06/2014 09:53 AM, Francesca Strappini wrote:
Dear all,
I'm trying to run a retinotopy analysis in several subjects but it crashed with an error in one subject. I ran this command line:
selxavg3-sess -a rtopy.HS.rh -s SUBJ09
and this is the last part of the output with the error message. Any help would be much appreciated.
Best Francesca
< M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013b (8.2.0.701) 64-bit (glnxa64) August 13, 2013 ---------------------------------------------------- Your MATLAB license will expire in 56 days. Please contact your system administrator or MathWorks to renew this license. ----------------------------------------------------To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com http://www.mathworks.com.
> >> >> >> >>
sxa3pwd =
/usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed
sxa3cmd =
/usr/local/freesurfer/fsfast/bin/selxavg3-sess -a rtopy.HS.rh -s SUBJ09
/usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>
#@# SUBJ09 ############################### /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09
$Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $ /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m /usr/local/freesurfer/matlab/MRIread.m
outtop = /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed Extension format = nii.gz nruns = 4 autostimdur =
outanadir = /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh Found 110059/126364 (87.1) voxels in mask Creating Design Matrix ... creation time = 0.005 sec DoMCFit = 1 ntptot = 960, nX = 36, DOF = 924 Saving X matrix to /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat Error using svd Input to SVD must not contain NaN or Inf.
Error in cond (line 36) s = svd(A);
Error in fast_selxavg3 (line 279) XCond = cond(XtX);
-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strappini@weizmann.ac.il mailto:francesca.strappini@weizmann.ac.il
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi, I attached the file, thank you!
Best Francesca
2014-11-06 18:58 GMT+02:00 Douglas N Greve greve@nmr.mgh.harvard.edu:
Can you send me
/usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat
On 11/06/2014 09:53 AM, Francesca Strappini wrote:
Dear all,
I'm trying to run a retinotopy analysis in several subjects but it crashed with an error in one subject. I ran this command line:
selxavg3-sess -a rtopy.HS.rh -s SUBJ09
and this is the last part of the output with the error message. Any help would be much appreciated.
Best Francesca
< M A T L A B (R) > Copyright 1984-2013 The MathWorks, Inc. R2013b (8.2.0.701) 64-bit (glnxa64) August 13, 2013 ---------------------------------------------------- Your MATLAB license will expire in 56 days. Please contact your system administrator or MathWorks to renew this license. ----------------------------------------------------To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com http://www.mathworks.com.
>> >> >> >> >>
sxa3pwd =
/usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed
sxa3cmd =
/usr/local/freesurfer/fsfast/bin/selxavg3-sess -a rtopy.HS.rh -s SUBJ09
/usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>
#@# SUBJ09 ############################### /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09
$Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $ /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m /usr/local/freesurfer/matlab/MRIread.m
outtop = /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed Extension format = nii.gz nruns = 4 autostimdur =
outanadir =
/usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh
Found 110059/126364 (87.1) voxels in mask Creating Design Matrix ... creation time = 0.005 sec DoMCFit = 1 ntptot = 960, nX = 36, DOF = 924 Saving X matrix to
/usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat
Error using svd Input to SVD must not contain NaN or Inf.
Error in cond (line 36) s = svd(A);
Error in fast_selxavg3 (line 279) XCond = cond(XtX);
-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strappini@weizmann.ac.il mailto:francesca.strappini@weizmann.ac.il
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
There are a bunch of columns in the design matrix that are 0, meaning that it expects some kind of stimulus to be there but it was not in the parfile. Do you only have eccen for this or do you also have polar? doug
On 11/08/2014 11:25 AM, Francesca Strappini wrote:
Hi, I attached the file, thank you!
Best Francesca
2014-11-06 18:58 GMT+02:00 Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu>:
Can you send me /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat On 11/06/2014 09:53 AM, Francesca Strappini wrote: > Dear all, > > I'm trying to run a retinotopy analysis in several subjects but it > crashed with an error in one subject. I ran this command line: > > selxavg3-sess -a rtopy.HS.rh -s SUBJ09 > > > and this is the last part of the output with the error message. > Any help would be much appreciated. > > Best > Francesca > > > < M A T L A B (R) > > Copyright 1984-2013 The MathWorks, Inc. > R2013b (8.2.0.701) 64-bit (glnxa64) > August 13, 2013 > > ---------------------------------------------------- > Your MATLAB license will expire in 56 days. > Please contact your system administrator or > MathWorks to renew this license. > ---------------------------------------------------- > > To get started, type one of these: helpwin, helpdesk, or demo. > For product information, visit www.mathworks.com <http://www.mathworks.com> > <http://www.mathworks.com>. > > >> >> >> >> >> >> >> > sxa3pwd = > > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed > > >> > sxa3cmd = > > /usr/local/freesurfer/fsfast/bin/selxavg3-sess -a rtopy.HS.rh -s SUBJ09 > > >> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> > > #@# SUBJ09 ############################### > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09 > ------------------------- > $Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $ > /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m > /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m > /usr/local/freesurfer/matlab/MRIread.m > ------------------------- > outtop = /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed > Extension format = nii.gz > nruns = 4 > autostimdur = > > > outanadir = > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh > Found 110059/126364 (87.1) voxels in mask > Creating Design Matrix > ... creation time = 0.005 sec > DoMCFit = 1 > ntptot = 960, nX = 36, DOF = 924 > Saving X matrix to > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat > Error using svd > Input to SVD must not contain NaN or Inf. > > Error in cond (line 36) > s = svd(A); > > Error in fast_selxavg3 (line 279) > XCond = cond(XtX); > > > -- > Francesca Strappini, Ph.D. > Neurobiology Department > Weizmann Institute of Science > 234 Herzl Street, Rehovot 7610001 Israel > Tel.: +972 58 444 2584 > E-mail: francesca.strappini@weizmann.ac.il <mailto:francesca.strappini@weizmann.ac.il> > <mailto:francesca.strappini@weizmann.ac.il <mailto:francesca.strappini@weizmann.ac.il>> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 <tel:617-724-2358> Fax: 617-726-7422 <tel:617-726-7422> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strappini@weizmann.ac.il mailto:francesca.strappini@weizmann.ac.il
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Doug, thanks for the answer. I have both, 2 runs of polar angle and 2 of eccentricity.
Francesca
On Monday, November 10, 2014, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
There are a bunch of columns in the design matrix that are 0, meaning that it expects some kind of stimulus to be there but it was not in the parfile. Do you only have eccen for this or do you also have polar? doug
On 11/08/2014 11:25 AM, Francesca Strappini wrote:
Hi, I attached the file, thank you!
Best Francesca
2014-11-06 18:58 GMT+02:00 Douglas N Greve <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu javascript:;>>:
Can you send me/usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat
On 11/06/2014 09:53 AM, Francesca Strappini wrote: > Dear all, > > I'm trying to run a retinotopy analysis in several subjects but it > crashed with an error in one subject. I ran this command line: > > selxavg3-sess -a rtopy.HS.rh -s SUBJ09 > > > and this is the last part of the output with the error message. > Any help would be much appreciated. > > Best > Francesca > > > < M A T L A B (R) > > Copyright 1984-2013 The MathWorks, Inc. > R2013b (8.2.0.701) 64-bit (glnxa64) > August 13, 2013 > > ---------------------------------------------------- > Your MATLAB license will expire in 56 days. > Please contact your system administrator or > MathWorks to renew this license. > ---------------------------------------------------- > > To get started, type one of these: helpwin, helpdesk, or demo. > For product information, visit www.mathworks.com <http://www.mathworks.com> > <http://www.mathworks.com>. > > >> >> >> >> >> >> >> > sxa3pwd = > > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed > > >> > sxa3cmd = > > /usr/local/freesurfer/fsfast/bin/selxavg3-sess -a rtopy.HS.rh -s SUBJ09 > > >> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> > > #@# SUBJ09 ############################### > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09 > ------------------------- > $Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $ > /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m > /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m > /usr/local/freesurfer/matlab/MRIread.m > ------------------------- > outtop = /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed > Extension format = nii.gz > nruns = 4 > autostimdur = > > > outanadir = >/usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh
> Found 110059/126364 (87.1) voxels in mask > Creating Design Matrix > ... creation time = 0.005 sec > DoMCFit = 1 > ntptot = 960, nX = 36, DOF = 924 > Saving X matrix to >/usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat
> Error using svd > Input to SVD must not contain NaN or Inf. > > Error in cond (line 36) > s = svd(A); > > Error in fast_selxavg3 (line 279) > XCond = cond(XtX); > > > -- > Francesca Strappini, Ph.D. > Neurobiology Department > Weizmann Institute of Science > 234 Herzl Street, Rehovot 7610001 Israel > Tel.: +972 58 444 2584 > E-mail: francesca.strappini@weizmann.ac.il <javascript:;> <mailto:francesca.strappini@weizmann.ac.il <javascript:;>> > <mailto:francesca.strappini@weizmann.ac.il <javascript:;> <mailto:francesca.strappini@weizmann.ac.il <javascript:;>>> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <javascript:;> <mailto:Freesurfer@nmr.mgh.harvard.edu <javascript:;>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <javascript:;> <mailto:greve@nmr.mgh.harvard.edu javascript:;>
Phone Number: 617-724-2358 <tel:617-724-2358> Fax: 617-726-7422 <tel:617-726-7422> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <javascript:;> <mailto:Freesurfer@nmr.mgh.harvard.edu javascript:;>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strappini@weizmann.ac.il javascript:; <mailto:francesca.strappini@weizmann.ac.il javascript:;>
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Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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Check in the rtopy.par file for the polar and make sure it actually says polar (and not eccen) inside
On 11/10/2014 01:23 PM, Francesca Strappini wrote:
Hi Doug, thanks for the answer. I have both, 2 runs of polar angle and 2 of eccentricity.
Francesca
On Monday, November 10, 2014, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
There are a bunch of columns in the design matrix that are 0, meaning that it expects some kind of stimulus to be there but it was not in the parfile. Do you only have eccen for this or do you also have polar? doug On 11/08/2014 11:25 AM, Francesca Strappini wrote: > Hi, I attached the file, thank you! > > Best > Francesca > > 2014-11-06 18:58 GMT+02:00 Douglas N Greve <greve@nmr.mgh.harvard.edu <javascript:;> > <mailto:greve@nmr.mgh.harvard.edu <javascript:;>>>: > > > Can you send me > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat > > On 11/06/2014 09:53 AM, Francesca Strappini wrote: > > Dear all, > > > > I'm trying to run a retinotopy analysis in several subjects but it > > crashed with an error in one subject. I ran this command line: > > > > selxavg3-sess -a rtopy.HS.rh -s SUBJ09 > > > > > > and this is the last part of the output with the error message. > > Any help would be much appreciated. > > > > Best > > Francesca > > > > > > < M A T L A B (R) > > > Copyright 1984-2013 The MathWorks, Inc. > > R2013b (8.2.0.701) 64-bit (glnxa64) > > August 13, 2013 > > > > ---------------------------------------------------- > > Your MATLAB license will expire in 56 days. > > Please contact your system administrator or > > MathWorks to renew this license. > > ---------------------------------------------------- > > > > To get started, type one of these: helpwin, helpdesk, or demo. > > For product information, visit www.mathworks.com <http://www.mathworks.com> > <http://www.mathworks.com> > > <http://www.mathworks.com>. > > > > >> >> >> >> >> >> >> > > sxa3pwd = > > > > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed > > > > >> > > sxa3cmd = > > > > /usr/local/freesurfer/fsfast/bin/selxavg3-sess -a rtopy.HS.rh -s > SUBJ09 > > > > >> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m > > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> > > > > #@# SUBJ09 ############################### > > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09 > > ------------------------- > > $Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $ > > /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m > > /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m > > /usr/local/freesurfer/matlab/MRIread.m > > ------------------------- > > outtop = /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed > > Extension format = nii.gz > > nruns = 4 > > autostimdur = > > > > > > outanadir = > > > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh > > Found 110059/126364 (87.1) voxels in mask > > Creating Design Matrix > > ... creation time = 0.005 sec > > DoMCFit = 1 > > ntptot = 960, nX = 36, DOF = 924 > > Saving X matrix to > > > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat > > Error using svd > > Input to SVD must not contain NaN or Inf. > > > > Error in cond (line 36) > > s = svd(A); > > > > Error in fast_selxavg3 (line 279) > > XCond = cond(XtX); > > > > > > -- > > Francesca Strappini, Ph.D. > > Neurobiology Department > > Weizmann Institute of Science > > 234 Herzl Street, Rehovot 7610001 Israel > > Tel.: +972 58 444 2584 > > E-mail: francesca.strappini@weizmann.ac.il <javascript:;> > <mailto:francesca.strappini@weizmann.ac.il <javascript:;>> > > <mailto:francesca.strappini@weizmann.ac.il <javascript:;> > <mailto:francesca.strappini@weizmann.ac.il <javascript:;>>> > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <javascript:;> > <mailto:Freesurfer@nmr.mgh.harvard.edu <javascript:;>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > greve@nmr.mgh.harvard.edu <javascript:;> <mailto:greve@nmr.mgh.harvard.edu <javascript:;>> > Phone Number: 617-724-2358 <tel:617-724-2358> > Fax: 617-726-7422 <tel:617-726-7422> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <javascript:;> <mailto:Freesurfer@nmr.mgh.harvard.edu <javascript:;>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > > -- > Francesca Strappini, Ph.D. > Neurobiology Department > Weizmann Institute of Science > 234 Herzl Street, Rehovot 7610001 Israel > Tel.: +972 58 444 2584 > E-mail: francesca.strappini@weizmann.ac.il <javascript:;> > <mailto:francesca.strappini@weizmann.ac.il <javascript:;>> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <javascript:;> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <javascript:;> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <javascript:;> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strappini@weizmann.ac.il mailto:francesca.strappini@weizmann.ac.il
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