Re: [Freesurfer] Tracula question

Thank you Anastasia. Another brain had a different problem: Here is the trac-all log:

mri_concat --i /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//106/dmri/dwi_frame.nii.gz --mean --o /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//106/dmri/lowb.nii.gz niiRead(): error opening file /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//106/dmri/dwi_frame.nii.gz ninputs = 1 Checking inputs ERROR: reading /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//106/dmri/dwi_frame.nii.gz Linux cerebro 2.6.32-358.2.1.el6.x86_64 #1 SMP Wed Mar 13 00:26:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux

trac-preproc exited with ERRORS at Wed Aug 7 13:01:21 EDT 2013

thanks so much,

Alan

On Wed, Aug 7, 2013 at 1:11 PM, Anastasia Yendiki < ayendiki@nmr.mgh.harvard.edu> wrote:

Hi Alan - Try removing the "" character from the end of the dcmlist definition. That's a change of line character.

a.y

On Wed, 7 Aug 2013, Alan Francis wrote:

Hi Anastasia:

...

Here is the trac-all log. Please find attached the dmrirc file.

csh::alanf@cerebro [/autofs/space/dali_003/users/** BW_project_DTI/FreeSurfer_5.3_**Data/diffusion_recons] : trac-all -prep -c /autofs/space/dali_003/users/**BW_project_DTI/FreeSurfer_5.3_** Data/diffusion_recons/dmrirc-**107

Too many ('s. ERROR: must specify as many DWI dicoms as subjects

Thank you so much.

Alan

On Wed, Aug 7, 2013 at 12:32 PM, Anastasia Yendiki < ayendiki@nmr.mgh.harvard.edu> wrote:

  Yes, please attach the dmrirc and trac-all.log. Thanks!

  a.y

  On Wed, 7 Aug 2013, Alan Francis wrote:

        Hi Anastasia:

        For one brain I got this error message :

        csh::alanf@cerebro
        [/autofs/space/dali_003/users/**

BW_project_DTI/FreeSurfer_5.3_**Data/diffusion_recons] : trac-all -prep -c /autofs/space/dali_003/users/** BW_project_DTI/FreeSurfer_5.3_**Data/diffusion_recons/dmrirc-**107

        Too many ('s.
        ERROR: must specify as many DWI dicoms as subjects

        I tried specifying the exact number of DWI dicoms but it is

not working. Should I send you my dmrirc for this brain?

        thanks,

        Alan

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/**compliancelinehttp://www.partners.org/complianceline. If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.