This is a bug. You can try this cd /lab-share/Psych-Glahn-e2/Public/UKB_4844/FS_MRI/6026423/surf/ ln -s lh.sphere.reg lh.fsaverage5.sphere.reg Then re-run
On 3/1/2021 4:14 PM, Amanda Rodrigue wrote:
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Hello, I am attempting to run mris_preproc with a single subject using the following command:
mris_preproc --s 6026423 --fwhm 10 --SUBJECTS_DIR /lab-share/Psych-Glahn-e2/Public/UKB_4844/FS_MRI --target fsaverage5 --hemi lh --meas thickness --out /lab-share/Psych-Glahn-e2/Public/UKB_4844/FS_analysis/PRS_reg/THICK/${s}.fs5.10mm.lh.thick.mgh
Although I have copied the fsaverage5 directory to my SUBJECTS_DIR, I am getting the following error: mri_surf2surf: could not read surface /lab-share/Psych-Glahn-e2/Public/UKB_4844/FS_MRI/6026423/surf/lh.fsaverage5.sphere.reg No such file or directory
What's strange is that I tried the same command, but instead of using the fsaverage5, I used the fsaverage (which is also located in my SUBJECTS_DIR) and it works fine.
I've attached both the log files when using the fsaverage and when using the fsaverag5. Am I missing something obvious?
Any input is appreciated, Amanda
-- Amanda Rodrigue, PhD Boston Children's Hospital Harvard Medical School 1 Autumn St. Boston, MA 02215
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