Hi Bruce,
I was using the original T1's in the mri_convert - perhaps I should be using the ac-pc aligned or talairach T1's? I do have a talairach.HEAD file and both acpc.BRIK and acpc.HEAD files. Should I use these instead of the originals?
Sorry for any confusion,
Jesse
On Sun, Nov 29, 2009 at 11:35 AM, Jesse Bledsoe bledsoej@msu.edu wrote:
Hi Bruce,
No. How do I check the .xfm?
Thanks,
Jesse
On Sat, Nov 28, 2009 at 3:10 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
Did you check the talairach.xfm?
On Nov 28, 2009, at 2:16 PM, Jesse Bledsoe bledsoej@msu.edu wrote:
Hello Experts,
I am getting the following error:
mri_watershed Error: GLOBAL region of the brain empty ! Linux http://circ.psy.msu.educirc.psy.msu.edu 2.6.9-67.0.4.ELsmp #1 SMP Fri Jan 18 05:00:58 EST 2008 i686 i686 i386 GNU/Linux
recon-all exited with ERRORS at Sat Nov 28 13:29:41 EST 2009
I do not seem to be getting this error with the other files.
Any suggestions?
Thanks so much,
Jesse
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