External Email - Use Caution
Hi Bruce I did't get your reply message yet. I have send the subject file to you. Could you give me your advises? Thank you for your help. Abby
Abby tang abbytang0925@gmail.com 于2019年4月19日周五 上午8:32写道：
Hello，Bruce I attached my subjects. Please help me. Thank you. Abby 2851A_T1_w4.nii https://drive.google.com/file/d/16rwuarmjHdyV3cImi_Gy0N71aqGytlzO/view?usp=drive_web
Bruce Fischl fischl@nmr.mgh.harvard.edu 于2019年4月18日周四 下午10:53写道：
Hi Abby
it's hard to tell from the image, but it looks like there is a big I/S bias field as well as large amounts of pathology.
If you upload the subject to our ftp site we will take a look
cheers Bruce On Thu, 18 Apr 2019, Abby tang wrote:
External Email - Use CautionHello FreeSurfer Developers,
I'm attempting to recon_all my subjects which is .nii file. But I
usually meet this error.
CORRECTING DEFECT 0 (vertices=67, convex hull=73, v0=950) After retessellation of defect 0 (v0=950), euler #=20
(87340,255044,167724) : difference with theory
(-32) = -52
CORRECTING DEFECT 1 (vertices=46367, convex hull=8524, v0=962) Segmentation fault (core dumped) Linux abby-virtual-machine 4.15.0-47-generic #50-Ubuntu SMP Wed Mar 13
10:44:52 UTC 2019 x86_64 x86_
64 x86_64 GNU/Linux
recon-all -s 2851A_T1_w4 exited with ERRORS at Thu Apr 18 20:25:16 CST
2019
To report a problem, see
http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
I check files in blow command and attached picture.
freeview -v 2851A_T1_w4/mri/norm.mgz -f 2851A_T1_w4/surf/lh.orig.nofix
2851A_T1_w4/surf/lh.inflated.
nofix
almost all of subjects go wrong. I need your help.
please give some advises with program statements in detail.
I really appreciate your help
- FreeSurfer version: freesurfer-linux-centos7_x86_64-dev.tar.gz
- Platform: ubuntu 18
- recon-all.log:see attached
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer