[Freesurfer] Issue with recon-all

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Hello all

I’m running the recon-all tool : recon-all -all -sd . -subjid FS -i ${subj}_T1_al.nii It works fine, but at some point, the program stops and asks at the terminal:

writing to orig_nu.mgz... rm: descend into write-protected directory './tmp.mri_nu_correct.mni.41843'? y rm: remove write-protected directory './tmp.mri_nu_correct.mni.41843'? y

and I have to answer “y”, but if I’m not checking it just sits and waits and take so much time…

do you have any idea what might case that? I have all the permissions on the directories.

Best Patrick

=================== Patrick Bédard, PhD, [C] Scientist National Institutes of Health National Institute of Neurological Disorders and Stroke