External Email - Use Caution
Thanks. I have attached the error output when using the debug option when attempting to run a subject. When I type from the command line (no --feat or --subject options), it is an identical error:
[edub@longleaf-login1 Freesurfer]$ reg-feat2anat --debug
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
: Command not found.
reg-feat2anat @FS_VERSION@
: Command not found.
-- Erin Walsh, Ph.D. Assistant Professor University of North Carolina-Chapel Hill Department of Psychiatry Chapel Hill, NC 27599-3367 erin_walsh@med.unc.edu pronouns: she/her
________________________________ From: Douglas N. Greve dgreve@mgh.harvard.edu Sent: Friday, November 13, 2020 12:01 PM To: Walsh, Erin erin_walsh@med.unc.edu; freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Re: tkregister issue with reg-feat2anat
I'm sure they will. When you re-run it, add --debug as the first argument and capture the entire terminal output to a file (don't try to take a snapshot)
On 11/13/2020 11:50 AM, Walsh, Erin wrote:
External Email - Use Caution
Not presently, as I would need to install on my personal computer. I can ask HPC IT to replace the file again and retest to see if things replicate...
Erin
________________________________ From: Douglas N. Greve dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu Sent: Friday, November 13, 2020 11:48 AM To: Walsh, Erin erin_walsh@med.unc.edumailto:erin_walsh@med.unc.edu; freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: tkregister issue with reg-feat2anat
Can you run it outside of the HCP?
On 11/13/2020 11:27 AM, Walsh, Erin wrote: