External Email - Use Caution
Hi Freesurfers,
I am trying to run tracula and was running the command bedpostx_datacheck and the terminal said:
-------- freesurfer-darwin-macOS-7.3.2-20220804-6354275 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /Applications/freesurfer/7.3.2
FSFAST_HOME /Applications/freesurfer/7.3.2/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /Applications/freesurfer/7.3.2/subjects
MNI_DIR /Applications/freesurfer/7.3.2/mni
SLE-PBS-h4tkn18vq6x3:~ timothydurazzo$ bedpostx_datacheck
-bash: bedpostx_datacheck: command not found
SLE-PBS-h4tkn18vq6x3:~ timothydurazzo$
I see that FSL (FSL_DIR) is not in the freesurfer environment at the top, how can we add that in order to get bedpostx_datacheck to run properly?
Thank you,
Lauren Stephens, MS
Assistant Clinical Research Coordinator
Department of Psychiatry and Behavioral Science
Stanford University School of Medicine
E: laurenss@stanford.edu
P: (650)-725-1716