Hi Ani,
sorry for the slow response (Easter...).
The script should be in $FREESURFER_HOME/bin, which is automatically added to your path when you source FreeSurfer.
Cheers,
/Eugenio
Juan Eugenio Iglesias
Translational Imaging Group
University College London
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Anik Dar aniqa4pm@gmail.com Sent: Thursday, March 29, 2018 9:26:45 PM To: Freesurfer support list Subject: [Freesurfer] which dev version for amygdala segmentation
Hi All,
How do I download reqd. files / FS developmental version to run hippocampal/amygdala pipeline as described in the wiki
https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmy...
I tried downloading the el capitan version of the development version of freesurfer from the
https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall
and I cant find any code segmentHA_T1.sh
Can anyone help,
Thanks
Ani