Hi Mohamed
you can use mri_synthesize to create a flash image with good T1 contrast from quantitative maps and run it through recon-all.
cheers Bruce On Mon, 11 Jan 2016, Mohamed Ali Bahri wrote:
Dear Freesurfer Experts,
I am wondering if the cortical reconstruction is possible for the quantitative mri images (R1, MT, PD...) obtained with the multiparameter sequences . If yes which image should i use?
Many thanks in advance,
Mohamed