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We are trying to run many subjects through recon-all in batches on an 8 core Windows Server on which we have virtualBox running CentOS7 and freesurfer 6.
Can you tell me if this command will utilize all 8 cores effectively to process all 8 subjects simultaneously?
recon-all -subjid TBI1_002 -i TBI1_002_v1.nii.gz \ -subjid TBI1_003 -i TBI1_003_v1.nii.gz \ -subjid TBI1_005 -i TBI1_005_v1.nii.gz \ -subjid TBI1_006 -i TBI1_006_v1.nii.gz \ -subjid TBI1_007 -i TBI1_007_v1.nii.gz \ -subjid TBI1_009 -i TBI1_009_v1.nii.gz \ -subjid TBI1_012 -i TBI1_012_v1.nii.gz \ -subjid TBI1_013 -i TBI1_013_v1.nii.gz \ -all -parallel -openmp 8
Thanks,
John
John R. Absher, MD, FAAN GHS Neurosciences jabsher@ghs.orgmailto:jabsher@ghs.org 864-350-6655 (mobile)