Re: [Freesurfer] How to re-run recon-all

For version 7, -make all does not work anymore :(

On 8/28/2020 4:26 PM, Camargo, Aldo wrote:

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Thanks a lot Bruce,

Aldo

*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Fischl, Bruce BFISCHL@mgh.harvard.edu *Sent:* Friday, August 28, 2020 4:15 PM *To:* freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] How to re-run recon-all

Hi Aldo

You should be able to use recon-all -make all … to run anything that did not complete. You might have to specify the -no-isrunning (or something like that) flag if it didn’t terminate cleanly

Cheers

Bruce

*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu *On Behalf Of *Camargo, Aldo *Sent:* Friday, August 28, 2020 3:11 PM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] How to re-run recon-all

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Hi Freeserufer experts:

By mistake I cancel the recon-all when it was about 3 hours of processing. There is a way to re-run the recon-all and that continues where it was stopped ?

Thanks a lot,

Aldo

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