External Email - Use Caution

Thanks a lot Bruce,

Aldo ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Fischl, Bruce BFISCHL@mgh.harvard.edu Sent: Friday, August 28, 2020 4:15 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] How to re-run recon-all

Hi Aldo

You should be able to use recon-all -make all … to run anything that did not complete. You might have to specify the -no-isrunning (or something like that) flag if it didn’t terminate cleanly

Cheers

Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Camargo, Aldo Sent: Friday, August 28, 2020 3:11 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] How to re-run recon-all

External Email - Use Caution

Hi Freeserufer experts:

By mistake I cancel the recon-all when it was about 3 hours of processing. There is a way to re-run the recon-all and that continues where it was stopped ?

Thanks a lot,

Aldo

Oh, sorry, I didn't realize that

From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Douglas N. Greve Sent: Saturday, August 29, 2020 11:30 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] How to re-run recon-all

For version 7, -make all does not work anymore :( On 8/28/2020 4:26 PM, Camargo, Aldo wrote:

External Email - Use Caution Thanks a lot Bruce,

Aldo ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Fischl, Bruce BFISCHL@mgh.harvard.edumailto:BFISCHL@mgh.harvard.edu Sent: Friday, August 28, 2020 4:15 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] How to re-run recon-all

Hi Aldo

You should be able to use recon-all -make all ... to run anything that did not complete. You might have to specify the -no-isrunning (or something like that) flag if it didn't terminate cleanly

Cheers

Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Camargo, Aldo Sent: Friday, August 28, 2020 3:11 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] How to re-run recon-all

External Email - Use Caution

Hi Freeserufer experts:

By mistake I cancel the recon-all when it was about 3 hours of processing. There is a way to re-run the recon-all and that continues where it was stopped ?

Thanks a lot,

Aldo

_______________________________________________

Freesurfer mailing list

Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu

https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer