This file does not exist. Each retinotopy run has the files: fmcpr.sm5.self.lh.nii and fmcpr.sm5.self.rh.nii I had the impression that mkanalysis-sess and selxavg-sess had to be ran separately on the files from each hemisphere for data that had been surface smoothed in preprocessing. Is this not the case?
~Jason
On Tue, Nov 9, 2010 at 9:30 AM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:
Does
/Users/jwebst/UW/Psych/VisCog/techAdmin/anatV1LGN/pilotData/RET/data/nsLGHa/bold/001/fmcpr.sm5.self.nii exist?
Jason Webster wrote:
I'm trying to run a retinotopic analysis with the following commands:
mkanalysis-sess -analysis retino-lh -TR 2 -retinotopy 40 -paradigm rtopy.para -funcstem fmcpr.sm5.self -surface self lh -mcextreg -runlistfile retRuns -fwhm 0 selxavg3-sess -analysis retino-lh -s somesubject -df sessdirand am getting the error:
>> >> >> >> >> >> >> /Applications/freesurfer/fsfast/toolbox/fast_selxavg3.m >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> $Id: fast_selxavg3.m,v 1.88.2.2 2010/07/16 15:31:24 greve Exp $ outtop = /Users/jwebst/UW/Psych/VisCog/techAdmin/anatV1LGN/pilotData/RET/data Extension format = nii ERROR: cannot determine format of/Users/jwebst/UW/Psych/VisCog/techAdmin/anatV1LGN/pilotData/RET/data/nsLGHa/bold/001/fmcpr.sm5.self
ERROR: attempting to read/Users/jwebst/UW/Psych/VisCog/techAdmin/anatV1LGN/pilotData/RET/data/nsLGHa/bold/001/fmcpr.sm5.self
------------------------------------------ ERROR: fast_selxavg3() failed\nIt looks like this might have something to do with analysis.info http://analysis.info
... funcstem fmcpr.sm5.self ... RawSpace surface self lh ...Should the funcstem have gotten '.lh' or should this be worked out by getana or selxavg3-sess?
Thanks,
~Jason
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