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Hello,
I have finished running segmentHA_T1.sh on my data and have gotten all the .mgz and .txt files in my mri folder. I would like to collect all the hippocampal volumes and get them into a table to run stats on.
When reading the documentation it says that
It will also produce files in the stats folder called hipposubfields.[lr]h.T1.v2x.stats and amygdalar-nuclei.[lr]h.T1.v2x.stats. These can be compiled across subject with, eg,
asegstats2table --statsfile=hipposubfields.lh.T1.v21.stats --tablefile=hipposubfields.lh.T1.v21.dat ...
However, the stats folders for my subjects do not have these files in the stats folder. Just the usual aseg.stats lh.aparc.a2009s.stats lh.aparc.DKTatlas.stats lh.aparc.pial.stats lh.aparc.stats lh.BA_exvivo.stats lh.BA_exvivo.thresh.stats lh.curv.stats lh.w-g.pct.stats rh.aparc.a2009s.stats rh.aparc.DKTatlas.stats rh.aparc.pial.stats rh.aparc.stats rh.BA_exvivo.stats rh.BA_exvivo.thresh.stats rh.curv.stats rh.w-g.pct.stats wmparc.stats
Is there a way to get the correct stats files in my stats folder so I can use the suggested command? Or is there a way to extract the information from the .txt files?
Any help you can provide would be greatly appreciated! *Daniel Callow* *PhD Student, Neuroscience and Cognitive Science* Exercise for Brain Health Lab University of Maryland, College Park *ddcc2442@gmail.com ddcc2442@gmail.com* 443-254-6298