Hi Ivan
you can convert any volume to any supported output type using mri_convert. It will figure out the format from the extension, so:
mri_convert aseg.mgz aseg.nii.gz
or
mri_convert aseg.mgz aseg.nii
should do the trick
cheers Bruce
On Mon, 30 Jan 2012, Fellhauer, Iven wrote:
Dear all,
I run recon-all with the ?autorecon1 and ?autorecon2 options. Now I want to store the segmentation results in a spm like way. One nifti file for each matter. Can I do this with freesurfer? And how can I do this with freesurfer?
Best regards,
Iven Fellhauer
Universitätsklinikum Heidelberg
Zentrum für Psychosoziale Medizin
Klinik für Allgemeine Psychiatrie
Sektion für Gerontopsychiatrie
Voßstr. 4
69115 Heidelberg
Tel.: +49 (0) 6221 - 56 7578
Email: iven.fellhauer@med.uni-heidelberg.de