Hi Ivan

you can convert any volume to any supported output type using mri_convert. It will figure out the format from the extension, so:

mri_convert aseg.mgz aseg.nii.gz

or

mri_convert aseg.mgz aseg.nii

should do the trick

cheers Bruce

On Mon, 30 Jan 2012, Fellhauer, Iven wrote:

Dear all,

I run recon-all with the  ?autorecon1 and ?autorecon2 options. Now I want to store the segmentation results in a spm like way. One nifti file for each matter. Can I do this with freesurfer? And how can I do this with freesurfer?

Best regards,

Iven Fellhauer

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