There might be some issues with jpeg compressed dicom files in 7.2 and before. Can you try using 7.3 to do the conversion with mri_convert or dcmunpack (add -dcm2niix to either one to get the new, better code).
On 9/5/2022 10:53 PM, Beatrice Everall wrote:
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# Hi there :) # I am trying to run recon-all on MRI data; I have multiple sequences including T1 maps and MAGiC. I have tried to run recon-all on these sequences but get the same error each time: #
# ERROR: 512, see /tmp/tmp.H88WWu.dcmdjpeg.out for more details #
# However when looking in that location I only see a H88WWu file, not H88WWu.dcmdjpeg.out. # I am using the Ubuntu 18.04 VM with the 7.2.0 release. #
# Attached is the recon-all.log. #
# Any suggestions would be very appreciated! # Thanks # Beatrice
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