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Hi FreeSurfer,
I am running trac-all prepocessing using a configuration file. I tried preprocessing a couple of participants, and I keep getting this error:
#-------------------------------------
#@# Tensor fit Sat Apr 11 21:29:36 PDT 2020
dtifit -k /Volumes/HuaExternal/DTI_FS/S11018a_LGI/dmri/dwi.nii.gz -m /Volumes/HuaExternal/DTI_FS/S11018a_LGI/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /Volumes/HuaExternal/DTI_FS/S11018a_LGI/dmri/bvecs -b /Volumes/HuaExternal/DTI_FS/S11018a_LGI/dmri/bvals -o /Volumes/HuaExternal/DTI_FS/S11018a_LGI/dmri/dtifit
libc++abi.dylib: terminating with uncaught exception of type std::logic_error: Mat::operator(): index out of bounds
Abort
This is my configuration file:
set dtroot = /Volumes/HuaExternal/DTI_FS set subjlist = ( S11018a_LGI ) set dcmroot = /Volumes/HuaExternal/DTI set dcmlist = ( S11018a.nii ) set bvecfile = /Volumes/HuaExternal/DTI/bvecsSPACE.txt set bvalfile = /Volumes/HuaExternal/DTI/bvals.txt set runlist = (1) set doeddy = 1 set dorotbvecs = 1 set usemaskanat = 1 set thrbet = 0.3 set doregflt = 0 set doregbbr = 1 set doregmni = 1 set doregcvs = 0 set mnitemp = /Volumes/HuaExternal/DTI/MNI152_T1_1mm_brain.nii.gz set pathlist = ( lh.cst_AS rh.cst_AS \ lh.ilf_AS rh.ilf_AS \ lh.unc_AS rh.unc_AS \ fmajor_PP fminor_PP \ lh.atr_PP rh.atr_PP \ lh.cab_PP rh.cab_PP \ lh.ccg_PP rh.ccg_PP \ lh.slfp_PP rh.slfp_PP \ lh.slft_PP rh.slft_PP ) set ncpts = (6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5)
Do you know what is going wrong, and how I would fix this issue?
Best,
Jessica
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Jessica Hua, M.A. Cognitive and Emotional Control Lab Doctoral Candidate Clinical Psychology University of Missouri