Yes the HCP pipelines have to take care of this as well so that the surfaces and volume align outside of FreeSurfer.
Peace,
Matt.
On 5/27/14, 8:35 AM, "Franz Liem" f.liem@psychologie.uzh.ch wrote:
Hi Michael,
I had a similar problem a while ago. Maybe this might help. http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg31152.html
Best, Franz
Am 23.05.2014 um 05:38 schrieb Harms, Michael:
Hi, I converted a surface to GIFTI e.g., mris_convert lh.white lh.white.gii
lh.white and lh.white.gii align when they are both loaded in 'tkmedit'. However, they do not align when loaded simultaneously in 'freeview'.
Of possible relevance: When I loaded lh.white.gii into 'freeview', I got the following message in the terminal: "Did not find any volume geometry information in the surface"
Is this possibly a bug of some sort in the display of GIFTI surfaces within 'freeview'?
This was all done with FS 5.3.
thanks, -MH
-- Michael Harms, Ph.D.
Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mharms@wustl.edu
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