Hi Michael,

I had a similar problem a while ago. Maybe this might help. http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg31152.html

Best, Franz

Am 23.05.2014 um 05:38 schrieb Harms, Michael:

Hi, I converted a surface to GIFTI e.g., mris_convert lh.white lh.white.gii

lh.white and lh.white.gii align when they are both loaded in 'tkmedit'. However, they do not align when loaded simultaneously in 'freeview'.

Of possible relevance: When I loaded lh.white.gii into 'freeview', I got the following message in the terminal: "Did not find any volume geometry information in the surface"

Is this possibly a bug of some sort in the display of GIFTI surfaces within 'freeview'?

This was all done with FS 5.3.

thanks, -MH

-- Michael Harms, Ph.D.

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Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mharms@wustl.edu

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Mike,

Hi, a new mris_convert I’ve posted to the ftp site corrects this problem. It will now store the volume geometry info into two giiCoordSys structs, which an updated freeview will be able to read. mris_convert is here:

ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/

and the newest freeview.bin, updated daily, is here:

ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/freeview/

Nick

On May 22, 2014, at 11:38 PM, Harms, Michael mharms@WUSTL.EDU wrote:

Hi, I converted a surface to GIFTI e.g., mris_convert lh.white lh.white.gii

lh.white and lh.white.gii align when they are both loaded in 'tkmedit'. However, they do not align when loaded simultaneously in 'freeview'.

Of possible relevance: When I loaded lh.white.gii into 'freeview', I got the following message in the terminal: "Did not find any volume geometry information in the surface"

Is this possibly a bug of some sort in the display of GIFTI surfaces within 'freeview'?

This was all done with FS 5.3.

thanks, -MH

-- Michael Harms, Ph.D.

---

Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mharms@wustl.edu

The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.

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