23 Mar
2020
23 Mar
'20
4:53 p.m.
External Email - Use Caution
Hello FreeSurfer Developers,
I'm attempting to produce an automated segmentation of the hippocampal substructures and the nuclei of the amygdala (see hippocampal module https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmy...).
When I try to run the segmentHA_T1.sh SUBJECT_ID [SUBJECTS_DIR] command with the dev version of freesurfer, I keep getting this error:
[cid:ced2aa15-ebc9-4e8e-8555-471e7094cf73]
I've tried setting the MCR_CACHE_ROOT env variable to somewhere under my user directory.
Does anyone have any suggestions on how this can be fixed?
Thank you in advance,
Pascale
