Thanks for your help. Yes. It looks like it is crashing during make_roi_paths.m Any ideas? Thanks.
---- On Fri, 30 Sep 2016 06:32:06 -0700 Alan Francis <alandarkenergy@gmail.com> wrote ----
Hi Prasser:
Did you set the environment for MATLAB e.g.,
setenv MATLABPATH /Applications/MATLAB_version setenv PATH ${MATLABPATH}/bin:${PATH}
This is required for FS to source MATLAB.
best,
Alan
On Thu, Sep 29, 2016 at 6:46 PM, prasser <prasser@zoho.com> wrote: Hi, Reposting. Thanks.
---- On Tue, 27 Sep 2016 16:53:21 -0700 prasser<prasser@zoho.com> wrote ----
Hi,
I'm looking to please get some help with -lgi.
I'm using matlab R2015b and FS5.3 with recon-all -s subj_id -lgi on os x 10.11.
Looking at the output, the first error occurs about here:
preparing pial mesh structure ... ...searching for mesh edges...done (206.94 sec). ... creating path file for vertex 1 / 65274 area file for outer ROIs saved at 1 In an assignment A(:) = B, the number of elements in A and B must be the same.
Error in dsearchn (line 79) [d(i),t(i)] = min(sum((x-yi).^2,2));
I have changed the script SearchProjectionOnPial.m as suggested on the ReleaseNotes page.
Any help would be much appreciated.
Thanks.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.