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Dear Freesurfer Community,
I ran the Freesurfer longitudinal pipeline for my subjects (1.5T, T1_data, 6 timepoints each). Now I want to continue with the longitudinal segmentation of hippocampal subfields:https://secure-web.cisco.com/1GVcN-oB6m3ReFE6G1f2L7PU8wxxvY2rraj4XNNSxZB5Hgz...
However, when I want to run the command: longHippoSubfieldsT1.sh <baseID>
I get the error message "bash: longHippoSubfieldsT1.sh: command not found"
First thing I did, was checking the Freesurfer folder for the longHippo..sh file. I am using FS 7.0 but the file is not available. *So my questions: where can I get the file longHippoSubfieldsT1.sh or what else can I do to proceed with the HC subfield segmentation?*
Thanks a lot for your support and looking forward to your reply.
Best
Xin